Variant report

Variant	rs534316485
Chromosome Location	chr3:45925290-45925291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv979827	chr3:45924432-45925432	Weak transcription Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45918400-45926000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:45923200-45928000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:45923400-45930000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:45923400-45932000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr3:45923400-45948200	Weak transcription	Right Atrium	heart
6	chr3:45923600-45930200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:45924000-45925400	Weak transcription	GM12878-XiMat	blood
8	chr3:45924200-45927400	Weak transcription	Primary T cells from cord blood	blood
9	chr3:45925000-45925400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:45925000-45927400	Genic enhancers	Fetal Thymus	thymus
11	chr3:45925200-45925400	Enhancers	K562	blood
12	chr3:45925200-45925600	Transcr. at gene 5' and 3'	Dnd41	blood
13	chr3:45925200-45926000	Enhancers	Thymus	Thymus
14	chr3:45925200-45949600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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