Variant report

Variant	rs534335879
Chromosome Location	chr4:57737403-57737404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:57734226..57738825-chr4:57772545..57776428,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000084093	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv822561	chr4:57736121-57747867	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57727800-57737600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:57727800-57740600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:57736800-57738000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:57736800-57738200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:57737000-57737800	Enhancers	Fetal Brain Female	brain
6	chr4:57737000-57738000	Enhancers	Fetal Brain Male	brain
7	chr4:57737000-57738200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr4:57737200-57737600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:57737200-57737600	Enhancers	Brain Germinal Matrix	brain
10	chr4:57737200-57737600	Enhancers	Brain Hippocampus Middle	brain
11	chr4:57737200-57737600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr4:57737200-57737600	Enhancers	Fetal Lung	lung
13	chr4:57737200-57737600	Active TSS	Fetal Muscle Trunk	muscle
14	chr4:57737200-57737600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr4:57737200-57737800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr4:57737200-57737800	Enhancers	Brain Angular Gyrus	brain
17	chr4:57737200-57737800	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr4:57737200-57738000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:57737200-57738000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr4:57737200-57738000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:57737200-57738000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr4:57737200-57738000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr4:57737200-57738000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr4:57737200-57738000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr4:57737200-57738000	Enhancers	Primary B cells from peripheral blood	blood
26	chr4:57737200-57738000	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr4:57737200-57738000	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr4:57737200-57738000	Enhancers	Right Atrium	heart
29	chr4:57737200-57738000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr4:57737200-57738000	Enhancers	Dnd41	blood
31	chr4:57737200-57738000	Enhancers	HSMMtube	muscle
32	chr4:57737200-57738000	Enhancers	NHDF-Ad	bronchial
33	chr4:57737200-57738200	Enhancers	H1 Cell Line	embryonic stem cell
34	chr4:57737200-57738200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr4:57737200-57738200	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr4:57737200-57738200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:57737200-57738200	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr4:57737200-57738200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr4:57737200-57738200	Enhancers	Brain Cingulate Gyrus	brain
40	chr4:57737200-57738200	Enhancers	Fetal Stomach	stomach
41	chr4:57737200-57738600	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr4:57737200-57739000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr4:57737200-57740800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr4:57737400-57737600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:57737400-57737600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:57737400-57737800	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr4:57737400-57737800	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr4:57737400-57737800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr4:57737400-57737800	Active TSS	Brain Substantia Nigra	brain
50	chr4:57737400-57737800	Enhancers	Thymus	Thymus

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