Variant report

Variant	rs534364406
Chromosome Location	chr6:71891576-71891577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr6:71891308-71891632	H1-hESC	embryonic stem cell:	n/a	n/a
2	RCOR1	chr6:71890948-71891810	IMR90	lung:	n/a	n/a
3	FOS	chr6:71891208-71891603	MCF10A-Er-Src	breast:	n/a	n/a
4	TEAD4	chr6:71891124-71891620	ECC-1	luminal epithelium:	n/a	n/a
5	MAX	chr6:71891242-71891660	H1-hESC	embryonic stem cell:	n/a	n/a
6	CEBPB	chr6:71891202-71891646	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr6:71891312-71891580	H1-hESC	embryonic stem cell:	n/a	n/a
8	USF2	chr6:71891280-71891613	Hela-S3	cervix:	n/a	n/a
9	BACH1	chr6:71891178-71891641	H1-hESC	embryonic stem cell:	n/a	n/a
10	SP1	chr6:71891114-71891665	H1-hESC	embryonic stem cell:	n/a	n/a
11	CEBPB	chr6:71891162-71891620	Hela-S3	cervix:	n/a	n/a
12	TEAD4	chr6:71891159-71891673	H1-hESC	embryonic stem cell:	n/a	n/a
13	BCL11A	chr6:71891331-71891583	H1-hESC	embryonic stem cell:	n/a	n/a
14	TEAD4	chr6:71891153-71891666	H1-hESC	embryonic stem cell:	n/a	n/a
15	FOSL2	chr6:71891163-71891687	SK-N-SH	brain:	n/a	n/a
16	EP300	chr6:71891199-71891588	Hela-S3	cervix:	n/a	n/a
17	MAZ	chr6:71890972-71891907	IMR90	lung:	n/a	n/a
18	MAFK	chr6:71891190-71891585	Hela-S3	cervix:	n/a	n/a
19	TEAD4	chr6:71891120-71891685	ECC-1	luminal epithelium:	n/a	n/a
20	SP1	chr6:71891081-71891615	A549	lung:	n/a	n/a
21	STAT3	chr6:71891193-71891595	MCF10A-Er-Src	breast:	n/a	n/a
22	GTF2F1	chr6:71891211-71891620	Hela-S3	cervix:	n/a	n/a
23	MAFK	chr6:71891269-71891602	IMR90	lung:	n/a	n/a
24	YY1	chr6:71891232-71891581	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr6:71891538-71891590	ProgFib	skin:	n/a	n/a
26	EP300	chr6:71891230-71891644	H1-hESC	embryonic stem cell:	n/a	n/a
27	ZNF143	chr6:71891200-71891598	H1-hESC	embryonic stem cell:	n/a	n/a
28	MAFK	chr6:71890937-71891647	H1-hESC	embryonic stem cell:	n/a	n/a
29	CEBPB	chr6:71891173-71891600	IMR90	lung:	n/a	n/a
30	RAD21	chr6:71891153-71891577	Hela-S3	cervix:	n/a	n/a
31	SP1	chr6:71891148-71891666	H1-hESC	embryonic stem cell:	n/a	n/a
32	JUND	chr6:71891140-71891602	H1-hESC	embryonic stem cell:	n/a	n/a
33	MAX	chr6:71891309-71891688	H1-hESC	embryonic stem cell:	n/a	n/a
34	TAF1	chr6:71891222-71891608	H1-hESC	embryonic stem cell:	n/a	n/a
35	SP1	chr6:71891160-71891640	A549	lung:	n/a	n/a
36	POLR2A	chr6:71891126-71891737	H1-hESC	embryonic stem cell:	n/a	n/a

No data

Variant related genes	Relation type
RNU6-411P	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71887400-71892000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:71889200-71892200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:71889400-71892200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:71890200-71892000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:71890600-71891800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:71890600-71892000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:71890600-71892000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:71890600-71892200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:71890600-71892600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:71890800-71891600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr6:71890800-71891600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:71890800-71891600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:71890800-71891800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:71890800-71891800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:71890800-71891800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:71890800-71891800	Enhancers	A549	lung
17	chr6:71890800-71891800	Enhancers	NHEK	skin
18	chr6:71890800-71891800	Enhancers	Osteobl	bone
19	chr6:71890800-71892000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr6:71890800-71892000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:71890800-71892000	Enhancers	Fetal Heart	heart
22	chr6:71890800-71892000	Enhancers	Hela-S3	cervix
23	chr6:71890800-71892000	Enhancers	HSMM	muscle
24	chr6:71890800-71892000	Enhancers	NHDF-Ad	bronchial
25	chr6:71890800-71892200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr6:71890800-71892200	Enhancers	HMEC	breast
27	chr6:71891000-71891600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:71891000-71891800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:71891000-71891800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr6:71891000-71891800	Enhancers	NH-A	brain
31	chr6:71891000-71891800	Enhancers	NHLF	lung
32	chr6:71891200-71891600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:71891200-71891600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:71891200-71891600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:71891200-71891600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:71891200-71891600	Enhancers	Right Atrium	heart
37	chr6:71891200-71891600	Flanking Active TSS	HSMMtube	muscle
38	chr6:71891200-71891800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:71891200-71891800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:71891200-71891800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr6:71891200-71892200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr6:71891200-71892200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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