Variant report

Variant	rs534381086
Chromosome Location	chr10:27091716-27091717
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27087122..27088975-chr10:27089037..27091906,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv947600	chr10:27090659-27093432	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27070800-27091800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:27074800-27091800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:27075000-27104600	Weak transcription	Esophagus	oesophagus
4	chr10:27079800-27091800	Weak transcription	Fetal Heart	heart
5	chr10:27079800-27092200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:27080800-27092000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:27082200-27105400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:27082600-27094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:27083600-27094800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
11	chr10:27085800-27095600	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:27086000-27093400	Weak transcription	Fetal Intestine Small	intestine
13	chr10:27086200-27096600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr10:27086600-27110400	Weak transcription	Fetal Intestine Large	intestine
15	chr10:27086800-27092000	Weak transcription	A549	lung
16	chr10:27087000-27097000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:27087200-27094400	Weak transcription	Aorta	Aorta
18	chr10:27087200-27096800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr10:27088000-27096000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr10:27088200-27093400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:27088200-27100800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:27088400-27096800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:27088600-27098800	Weak transcription	Pancreas	Pancrea
24	chr10:27089000-27095600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:27089200-27092000	Flanking Active TSS	GM12878-XiMat	blood
26	chr10:27089800-27093000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:27090000-27092000	Enhancers	Small Intestine	intestine
28	chr10:27090000-27092400	Enhancers	Brain Substantia Nigra	brain
29	chr10:27090000-27093800	Enhancers	Dnd41	blood
30	chr10:27090000-27096400	Weak transcription	Fetal Stomach	stomach
31	chr10:27090200-27092400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:27090200-27093600	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr10:27090200-27094000	Weak transcription	Right Atrium	heart
34	chr10:27090400-27092000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:27090400-27092000	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr10:27090400-27092200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:27090400-27092400	Enhancers	Brain Angular Gyrus	brain
38	chr10:27090400-27093000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:27090400-27093000	Weak transcription	Fetal Thymus	thymus
40	chr10:27090400-27093000	Weak transcription	Left Ventricle	heart
41	chr10:27090400-27095200	Weak transcription	Lung	lung
42	chr10:27090400-27097400	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr10:27090600-27092400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr10:27090600-27094000	Enhancers	Primary T cells from cord blood	blood
45	chr10:27090600-27096800	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr10:27090800-27092200	Enhancers	Brain Cingulate Gyrus	brain
47	chr10:27090800-27092400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:27090800-27092600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr10:27091000-27092000	Weak transcription	Brain Germinal Matrix	brain
50	chr10:27091000-27092600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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