Variant report

Variant	rs534464508
Chromosome Location	chr5:97838378-97838379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv328931	chr5:97837626-97844231	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97833800-97839000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:97834200-97839000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:97834400-97839400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:97835800-97839000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:97835800-97839400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:97836000-97839200	Weak transcription	Fetal Intestine Small	intestine
7	chr5:97836600-97839600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:97837000-97838400	Enhancers	Fetal Intestine Large	intestine
9	chr5:97837400-97840200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:97837600-97838400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:97837600-97838400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:97837600-97838400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:97837600-97838400	Enhancers	HSMM	muscle
14	chr5:97837600-97839200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr5:97837800-97838400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:97837800-97838400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:97837800-97838400	Enhancers	Fetal Muscle Leg	muscle
18	chr5:97837800-97838400	Enhancers	NHDF-Ad	bronchial
19	chr5:97837800-97838400	Enhancers	Osteobl	bone
20	chr5:97837800-97839400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:97838000-97844400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:97838200-97838400	Enhancers	Small Intestine	intestine

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