Variant report

Variant	rs534474473
Chromosome Location	chr14:105486200-105486201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105448840..105458160-chr14:105477229..105492100,32	MCF-7	breast:
2	chr14:105433505..105435724-chr14:105485407..105487302,3	MCF-7	breast:
3	chr14:91719454..91721196-chr14:105485450..105487377,2	MCF-7	breast:
4	chr14:105436785..105438892-chr14:105486187..105488298,2	MCF-7	breast:
5	chr14:105468423..105470869-chr14:105484472..105486561,2	MCF-7	breast:
6	chr14:105440890..105445623-chr14:105485614..105489562,6	MCF-7	breast:
7	chr14:105452399..105454972-chr14:105485871..105488403,3	K562	blood:
8	chr14:105231590..105234247-chr14:105484637..105486265,2	K562	blood:
9	chr14:105444693..105446444-chr14:105485592..105488194,3	K562	blood:
10	chr14:105433937..105458439-chr14:105476653..105492775,70	MCF-7	breast:
11	chr14:105359659..105361508-chr14:105484328..105487117,2	MCF-7	breast:
12	chr14:105485865..105488702-chr14:105521834..105523359,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000099814	Chromatin interaction
ENSG00000185567	Chromatin interaction
ENSG00000119714	Chromatin interaction
ENSG00000183484	Chromatin interaction
ENSG00000140104	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv902419	chr14:105381763-105494262	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv456457	chr14:105404384-105555396	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
7	nsv566141	chr14:105404384-105555396	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
8	nsv902420	chr14:105410183-105494262	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	nsv902421	chr14:105410183-105574843	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
10	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
11	nsv1052190	chr14:105423761-105722653	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
12	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
13	nsv1042303	chr14:105435649-105633544	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
14	nsv456458	chr14:105435649-105690092	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv566150	chr14:105435649-105690092	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
16	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
17	nsv566151	chr14:105459140-105555396	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
18	nsv456459	chr14:105459140-105617891	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
19	nsv566152	chr14:105459140-105617891	Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
20	nsv902425	chr14:105463936-105690092	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
21	nsv983941	chr14:105485574-105534240	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
22	esv3421474	chr14:105485932-105488480	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:160 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105473800-105486600	Weak transcription	Aorta	Aorta
2	chr14:105478200-105486200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:105478400-105486200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:105478400-105486200	Weak transcription	Lung	lung
5	chr14:105478400-105486400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:105479600-105486200	Weak transcription	Left Ventricle	heart
7	chr14:105481400-105486400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:105482000-105486200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:105483000-105486200	Enhancers	Placenta	Placenta
10	chr14:105484000-105487200	Transcr. at gene 5' and 3'	Dnd41	blood
11	chr14:105484200-105486200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:105484200-105486800	Transcr. at gene 5' and 3'	NHEK	skin
13	chr14:105484400-105486200	Enhancers	Primary B cells from peripheral blood	blood
14	chr14:105484400-105486200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr14:105484400-105486400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:105484400-105486400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr14:105484400-105486800	Transcr. at gene 5' and 3'	A549	lung
18	chr14:105484600-105486400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:105484800-105486200	Enhancers	Right Ventricle	heart
20	chr14:105484800-105486200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr14:105484800-105486400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr14:105484800-105486400	Enhancers	Primary B cells from cord blood	blood
23	chr14:105485000-105486200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr14:105485200-105486600	Transcr. at gene 5' and 3'	K562	blood
25	chr14:105485400-105486200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr14:105485400-105486200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr14:105485400-105486200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:105485400-105486200	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
29	chr14:105485400-105486200	Enhancers	Gastric	stomach
30	chr14:105485400-105486200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr14:105485400-105486200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr14:105485400-105486200	Flanking Active TSS	Hela-S3	cervix
33	chr14:105485400-105486400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:105485400-105486400	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:105485400-105486400	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr14:105485400-105486400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr14:105485400-105486400	Enhancers	Brain Hippocampus Middle	brain
38	chr14:105485400-105486400	Enhancers	Pancreas	Pancrea
39	chr14:105485400-105486400	Flanking Active TSS	HUVEC	blood vessel
40	chr14:105485400-105486600	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:105485400-105486600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
42	chr14:105485400-105486600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr14:105485400-105486600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr14:105485400-105486600	Flanking Active TSS	Thymus	Thymus
45	chr14:105485400-105486600	Enhancers	Spleen	Spleen
46	chr14:105485400-105486600	Flanking Active TSS	Osteobl	bone
47	chr14:105485400-105486800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr14:105485400-105486800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr14:105485400-105486800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr14:105485400-105486800	Flanking Active TSS	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links