Variant report

Variant	rs534499667
Chromosome Location	chr22:28810493-28810494
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv962786	chr22:28810262-28812638	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28793000-28814000	Weak transcription	Left Ventricle	heart
2	chr22:28793000-28819800	Weak transcription	Fetal Intestine Small	intestine
3	chr22:28798800-28821200	Weak transcription	Dnd41	blood
4	chr22:28806200-28813000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr22:28806800-28815400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr22:28806800-28815800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr22:28807400-28821200	Weak transcription	Hela-S3	cervix
8	chr22:28807600-28810600	Weak transcription	Brain Angular Gyrus	brain
9	chr22:28807600-28814000	Weak transcription	Brain Germinal Matrix	brain
10	chr22:28808400-28821400	Weak transcription	Gastric	stomach
11	chr22:28808400-28821800	Weak transcription	Psoas Muscle	Psoas
12	chr22:28808800-28813000	Weak transcription	Aorta	Aorta
13	chr22:28809600-28810800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr22:28809600-28811200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr22:28809800-28810600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr22:28809800-28810600	Enhancers	Adipose Nuclei	Adipose
17	chr22:28809800-28810600	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr22:28809800-28810600	Enhancers	Fetal Lung	lung
19	chr22:28809800-28810600	Enhancers	Rectal Smooth Muscle	rectum
20	chr22:28809800-28810600	Enhancers	HSMMtube	muscle
21	chr22:28809800-28810600	Enhancers	HUVEC	blood vessel
22	chr22:28809800-28810600	Enhancers	Osteobl	bone
23	chr22:28809800-28810800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr22:28809800-28810800	Enhancers	Colon Smooth Muscle	Colon
25	chr22:28809800-28810800	Enhancers	NHDF-Ad	bronchial
26	chr22:28810000-28810600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr22:28810000-28810600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr22:28810000-28810600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr22:28810000-28810600	Enhancers	HepG2	liver
30	chr22:28810000-28810600	Enhancers	NHLF	lung
31	chr22:28810000-28810800	Enhancers	Small Intestine	intestine
32	chr22:28810200-28810600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr22:28810200-28810600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr22:28810200-28810600	Enhancers	Fetal Brain Female	brain
35	chr22:28810200-28810600	Enhancers	Fetal Heart	heart
36	chr22:28810200-28810600	Enhancers	Ovary	ovary
37	chr22:28810200-28810600	Enhancers	Right Atrium	heart
38	chr22:28810200-28810600	Enhancers	Right Ventricle	heart
39	chr22:28810200-28810600	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr22:28810400-28811400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr22:28810400-28811800	Enhancers	Fetal Brain Male	brain

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