Variant report

Variant	rs534509871
Chromosome Location	chr17:37818792-37818793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr17:37818770-37819586	ECC-1	luminal epithelium:	n/a	chr17:37819094-37819111
2	NFIC	chr17:37818514-37819662	ECC-1	luminal epithelium:	n/a	n/a
3	POLR2A	chr17:37818618-37818852	HepG2	liver:	n/a	n/a
4	TCF12	chr17:37818426-37819753	ECC-1	luminal epithelium:	n/a	n/a
5	TEAD4	chr17:37818663-37819295	ECC-1	luminal epithelium:	n/a	n/a
6	YY1	chr17:37818786-37819576	ECC-1	luminal epithelium:	n/a	chr17:37819094-37819111
7	ZBTB7A	chr17:37818112-37820811	ECC-1	luminal epithelium:	n/a	chr17:37818475-37818489
8	ZBTB7A	chr17:37818315-37819733	ECC-1	luminal epithelium:	n/a	chr17:37818475-37818489
9	TCF12	chr17:37818523-37820614	ECC-1	luminal epithelium:	n/a	n/a
10	ESR1	chr17:37818741-37819194	ECC-1	luminal epithelium:	n/a	n/a
11	EP300	chr17:37818580-37819614	ECC-1	luminal epithelium:	n/a	n/a
12	NR3C1	chr17:37818719-37819104	ECC-1	luminal epithelium:	n/a	n/a
13	NFIC	chr17:37818618-37819686	ECC-1	luminal epithelium:	n/a	n/a
14	ESR1	chr17:37818684-37819105	ECC-1	luminal epithelium:	n/a	n/a
15	NR3C1	chr17:37818652-37819118	ECC-1	luminal epithelium:	n/a	n/a
16	ESR1	chr17:37818634-37819205	ECC-1	luminal epithelium:	n/a	n/a
17	TCF12	chr17:37818790-37819087	H1-hESC	embryonic stem cell:	n/a	n/a
18	TEAD4	chr17:37818536-37819532	ECC-1	luminal epithelium:	n/a	n/a
19	EGR1	chr17:37818782-37819198	ECC-1	luminal epithelium:	n/a	n/a
20	MAX	chr17:37818616-37819524	ECC-1	luminal epithelium:	n/a	n/a
21	ESR1	chr17:37818648-37819084	ECC-1	luminal epithelium:	n/a	n/a
22	MAX	chr17:37818642-37819676	ECC-1	luminal epithelium:	n/a	n/a
23	USF1	chr17:37818716-37819591	ECC-1	luminal epithelium:	n/a	n/a
24	EP300	chr17:37818472-37819821	ECC-1	luminal epithelium:	n/a	n/a
25	FOXM1	chr17:37818544-37819371	ECC-1	luminal epithelium:	n/a	n/a
26	FOXM1	chr17:37818549-37819461	ECC-1	luminal epithelium:	n/a	n/a
27	ESR1	chr17:37818720-37819556	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:37814865..37817539-chr17:37818088..37820916,2	MCF-7	breast:
2	chr17:37796408..37798750-chr17:37816714..37819349,2	MCF-7	breast:
3	chr17:37806164..37807865-chr17:37817828..37819682,2	MCF-7	breast:
4	chr17:37818282..37821110-chr17:37882752..37884709,2	K562	blood:
5	chr17:37792116..37794246-chr17:37816401..37819185,2	MCF-7	breast:

No data

Variant related genes	Relation type
TCAP	TF binding region
ENSG00000141736	Chromatin interaction
ENSG00000131748	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv833442	chr17:37692880-37861291	Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv908205	chr17:37709422-37830900	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv908206	chr17:37709422-37866005	Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv833443	chr17:37725640-37882864	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
8	nsv457738	chr17:37770005-37831035	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv574991	chr17:37770005-37831035	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv516757	chr17:37781849-37834541	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
11	esv1792029	chr17:37797757-37886460	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
12	nsv908213	chr17:37807698-37839493	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
13	nsv528093	chr17:37814080-37866005	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv908214	chr17:37814224-37861833	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv574992	chr17:37818561-37822311	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
16	nsv908215	chr17:37818561-37834541	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37795000-37823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr17:37799800-37819600	Weak transcription	Osteobl	bone
3	chr17:37800000-37820000	Weak transcription	NH-A	brain
4	chr17:37803800-37821800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr17:37808400-37819200	Weak transcription	Small Intestine	intestine
6	chr17:37809800-37819400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr17:37810000-37819400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr17:37810000-37819600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr17:37810000-37820000	Weak transcription	HSMMtube	muscle
10	chr17:37810000-37820400	Strong transcription	Brain Germinal Matrix	brain
11	chr17:37810200-37819800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr17:37810600-37819200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr17:37810600-37819200	Strong transcription	Fetal Intestine Large	intestine
14	chr17:37810600-37820000	Weak transcription	K562	blood
15	chr17:37810600-37821000	Weak transcription	Fetal Brain Male	brain
16	chr17:37810800-37819400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr17:37810800-37819600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr17:37810800-37820600	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr17:37811800-37819400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:37811800-37820800	Strong transcription	Fetal Brain Female	brain
21	chr17:37812000-37819400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr17:37812000-37819600	Genic enhancers	Lung	lung
23	chr17:37812400-37819200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr17:37812400-37819600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr17:37812600-37819400	Strong transcription	Placenta Amnion	Placenta Amnion
26	chr17:37812600-37819600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr17:37813000-37820800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr17:37813400-37819400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr17:37814000-37819200	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr17:37814000-37819800	Strong transcription	Dnd41	blood
31	chr17:37814000-37820400	Genic enhancers	Fetal Muscle Trunk	muscle
32	chr17:37814200-37819400	Genic enhancers	Primary B cells from peripheral blood	blood
33	chr17:37814600-37819000	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr17:37814800-37819800	Genic enhancers	Fetal Muscle Leg	muscle
35	chr17:37815000-37819400	Genic enhancers	Placenta	Placenta
36	chr17:37816200-37819200	Genic enhancers	Liver	Liver
37	chr17:37816200-37819400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr17:37816200-37819400	Genic enhancers	Brain Anterior Caudate	brain
39	chr17:37816400-37819200	Genic enhancers	Stomach Smooth Muscle	stomach
40	chr17:37816400-37819400	Strong transcription	NHLF	lung
41	chr17:37816400-37819600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr17:37816400-37819600	Genic enhancers	Right Ventricle	heart
43	chr17:37816400-37819600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr17:37816600-37819600	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr17:37816600-37821600	Enhancers	Psoas Muscle	Psoas
46	chr17:37816800-37819000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr17:37816800-37819400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr17:37816800-37819400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr17:37816800-37819600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr17:37816800-37820800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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