Variant report

Variant	rs534540069
Chromosome Location	chr4:144391940-144391941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757960	chr4:144348293-145131592	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	esv2759288	chr4:144348293-145131592	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1019980	chr4:144350575-144399936	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2576302	chr4:144390957-144392263	Genic enhancers Strong transcription Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144336400-144392200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:144339400-144394600	Weak transcription	Colonic Mucosa	Colon
3	chr4:144353200-144398600	Weak transcription	Brain Germinal Matrix	brain
4	chr4:144353600-144400000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:144360200-144399000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:144363200-144395400	Weak transcription	Spleen	Spleen
7	chr4:144363200-144398600	Weak transcription	Lung	lung
8	chr4:144365600-144398400	Weak transcription	NHLF	lung
9	chr4:144366200-144394400	Weak transcription	Psoas Muscle	Psoas
10	chr4:144373200-144399000	Weak transcription	Fetal Brain Male	brain
11	chr4:144376000-144392800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr4:144376000-144398400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:144376600-144392000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:144376800-144410000	Weak transcription	Pancreas	Pancrea
15	chr4:144377200-144397400	Weak transcription	NHDF-Ad	bronchial
16	chr4:144378600-144393200	Weak transcription	Osteobl	bone
17	chr4:144379400-144399000	Weak transcription	HSMMtube	muscle
18	chr4:144380000-144392200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:144380200-144392000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:144380200-144392000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr4:144380400-144392400	Strong transcription	Fetal Intestine Large	intestine
22	chr4:144380600-144393600	Strong transcription	Placenta	Placenta
23	chr4:144381000-144392000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:144381400-144392000	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr4:144382200-144392000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:144382800-144396200	Weak transcription	Small Intestine	intestine
27	chr4:144382800-144400600	Weak transcription	Esophagus	oesophagus
28	chr4:144382800-144410200	Weak transcription	Gastric	stomach
29	chr4:144383000-144405800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:144383600-144393200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr4:144384000-144393400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr4:144384200-144392600	Weak transcription	Fetal Thymus	thymus
33	chr4:144384200-144400600	Weak transcription	Right Ventricle	heart
34	chr4:144384200-144409800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:144384400-144392600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr4:144384400-144400200	Weak transcription	Ovary	ovary
37	chr4:144384800-144397200	Weak transcription	Left Ventricle	heart
38	chr4:144386200-144392000	Strong transcription	Primary B cells from cord blood	blood
39	chr4:144386200-144392000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:144386200-144392200	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr4:144386400-144392000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr4:144386600-144392000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr4:144386600-144392000	Strong transcription	Adipose Nuclei	Adipose
44	chr4:144386600-144392000	Strong transcription	Stomach Smooth Muscle	stomach
45	chr4:144387200-144392000	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr4:144387200-144392200	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr4:144387200-144392400	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr4:144388000-144392000	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr4:144388600-144397400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:144389000-144394600	Weak transcription	Primary B cells from peripheral blood	blood

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