Variant report

Variant	rs534561587
Chromosome Location	chr11:34109177-34109178
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:34109167-34109187	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:34109044-34110388	SK-N-MC	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34108216..34109873-chr11:34119839..34122564,2	MCF-7	breast:
2	chr11:34106069..34110524-chr11:34130126..34133963,4	K562	blood:
3	chr11:34106541..34110325-chr11:34122744..34126295,3	K562	blood:
4	chr11:34098911..34101667-chr11:34106507..34109187,2	MCF-7	breast:
5	chr11:34072805..34076700-chr11:34102916..34109372,5	MCF-7	breast:

No data

Variant related genes	Relation type
CAPRIN1	TF binding region
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3459252	chr11:34108746-34109285	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3507157	chr11:34108771-34109287	Genic enhancers Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3507155	chr11:34108785-34109267	Genic enhancers Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3507156	chr11:34108793-34109214	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3459286	chr11:34108804-34109215	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3459274	chr11:34108810-34109248	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3459263	chr11:34108815-34109205	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3507153	chr11:34108817-34109234	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3358705	chr11:34108837-34109204	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3459241	chr11:34108855-34109182	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3507154	chr11:34108865-34109191	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3459297	chr11:34108869-34109189	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3507158	chr11:34108869-34109189	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34079000-34126600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34083400-34126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:34083600-34124800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:34088600-34110800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:34088600-34124600	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:34088800-34124000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:34091000-34123400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr11:34091000-34123400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr11:34091200-34123600	Strong transcription	Dnd41	blood
10	chr11:34091600-34123800	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:34091600-34124200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:34091800-34123400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:34091800-34124200	Strong transcription	Fetal Thymus	thymus
14	chr11:34091800-34124600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:34091800-34124800	Strong transcription	Fetal Intestine Large	intestine
16	chr11:34092000-34119800	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:34092600-34110600	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:34092600-34122200	Strong transcription	Fetal Brain Female	brain
19	chr11:34092600-34123000	Strong transcription	GM12878-XiMat	blood
20	chr11:34092600-34123400	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:34092600-34124800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:34092600-34125000	Strong transcription	Liver	Liver
23	chr11:34093000-34110600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:34093000-34122400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:34093200-34122400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr11:34093200-34123200	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr11:34093200-34123400	Strong transcription	Placenta	Placenta
28	chr11:34093400-34122400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:34093400-34123000	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr11:34093400-34124000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr11:34093600-34116600	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:34093600-34125000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:34094000-34124000	Strong transcription	Fetal Lung	lung
34	chr11:34095000-34119600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:34096600-34110600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:34096600-34124000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:34096800-34122400	Strong transcription	Primary T cells from cord blood	blood
38	chr11:34097000-34123400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:34097200-34123400	Strong transcription	Duodenum Mucosa	Duodenum
40	chr11:34097200-34126200	Weak transcription	Stomach Mucosa	stomach
41	chr11:34097400-34110600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:34097400-34110600	Strong transcription	Brain Anterior Caudate	brain
43	chr11:34097400-34123000	Strong transcription	Stomach Smooth Muscle	stomach
44	chr11:34097600-34122400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:34097600-34122600	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr11:34097600-34123200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:34097800-34110400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:34098000-34110800	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr11:34098000-34124000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr11:34098000-34124000	Strong transcription	Osteobl	bone

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