Variant report

Variant	rs534581667
Chromosome Location	chr3:22943342-22943343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:22943260-22943410	HPAF	blood vessel:	n/a	n/a
2	CTCF	chr3:22943340-22943490	HEK293	kidney:	n/a	n/a
3	CTCF	chr3:22943240-22943390	HEEpiC	esophagus:	n/a	n/a
4	CTCF	chr3:22943220-22943370	HMEC	breast:	n/a	n/a
5	CTCF	chr3:22943240-22943390	GM12875	blood:	n/a	n/a
6	CTCF	chr3:22943260-22943410	GM12864	blood:	n/a	n/a
7	CTCF	chr3:22943300-22943450	NHEK	skin:	n/a	n/a
8	CHD2	chr3:22943258-22943420	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTCF	chr3:22943240-22943390	Hela-S3	cervix:	n/a	n/a
10	CTCF	chr3:22943264-22943503	H1-hESC	embryonic stem cell:	n/a	n/a
11	KAP1	chr3:22943079-22943578	HEK293	kidney:	n/a	n/a
12	CTCF	chr3:22943280-22943430	AoAF	blood vessel:	n/a	n/a
13	CTCF	chr3:22943240-22943390	NHDF-neo	bronchial:	n/a	n/a
14	CTCF	chr3:22943200-22943350	HPF	lung:	n/a	n/a
15	CTCF	chr3:22943220-22943370	GM12874	blood:	n/a	n/a
16	SETDB1	chr3:22943128-22943627	U2OS	brain:	n/a	n/a
17	CTCF	chr3:22943220-22943370	GM12878	blood:	n/a	n/a
18	CTCF	chr3:22943260-22943410	GM12872	blood:	n/a	n/a
19	CTCF	chr3:22943280-22943430	GM12873	blood:	n/a	n/a
20	CTCF	chr3:22943320-22943470	RPTEC	kidney:	n/a	n/a
21	CTCF	chr3:22943220-22943370	HPF	lung:	n/a	n/a
22	CTCF	chr3:22943300-22943450	MCF-7	breast:	n/a	n/a
23	CTCF	chr3:22943260-22943410	K562	blood:	n/a	n/a
24	CTCF	chr3:22943240-22943390	GM12873	blood:	n/a	n/a
25	CTCF	chr3:22943200-22943350	NHEK	skin:	n/a	n/a
26	ZNF143	chr3:22943248-22943528	H1-hESC	embryonic stem cell:	n/a	n/a
27	CTCF	chr3:22943280-22943430	A549	lung:	n/a	n/a
28	CTCF	chr3:22943280-22943430	GM12864	blood:	n/a	n/a
29	CTCF	chr3:22943220-22943370	HCT-116	colon:	n/a	n/a
30	CTCF	chr3:22943320-22943470	GM12878	blood:	n/a	n/a
31	CTCF	chr3:22943240-22943390	RPTEC	kidney:	n/a	n/a
32	CTCF	chr3:22943240-22943390	HMF	breast:	n/a	n/a
33	CTCF	chr3:22943300-22943450	HCFaa	heart:	n/a	n/a
34	CTCF	chr3:22943280-22943430	HRE	kidney:	n/a	n/a
35	CTCF	chr3:22943240-22943390	GM06990	blood:	n/a	n/a
36	CTCF	chr3:22943240-22943390	GM12866	blood:	n/a	n/a

No data

Variant related genes	Relation type
RANP7	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv16397	chr3:22941523-22946888	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links