Variant report

Variant	rs534595585
Chromosome Location	chr1:166913523-166913524
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332845	chr1:166913225-166914648	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166891000-166916400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:166892000-166913800	Weak transcription	Thymus	Thymus
3	chr1:166900800-166913600	Weak transcription	GM12878-XiMat	blood
4	chr1:166905800-166913600	Weak transcription	Right Atrium	heart
5	chr1:166905800-166915200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:166907600-166914000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:166907800-166913800	Weak transcription	Brain Angular Gyrus	brain
8	chr1:166909000-166914000	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:166909000-166914000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:166909000-166914000	Weak transcription	Brain Substantia Nigra	brain
11	chr1:166909800-166913800	Weak transcription	Fetal Brain Male	brain
12	chr1:166910600-166913600	Weak transcription	Fetal Heart	heart
13	chr1:166912800-166913600	Enhancers	HSMM	muscle
14	chr1:166912800-166915400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:166912800-166915400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr1:166912800-166915400	Enhancers	Dnd41	blood
17	chr1:166912800-166916000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:166913000-166913600	Enhancers	NH-A	brain
19	chr1:166913000-166913800	Enhancers	Primary T cells from cord blood	blood
20	chr1:166913000-166913800	Enhancers	HSMMtube	muscle
21	chr1:166913000-166914000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:166913000-166914400	Enhancers	Osteobl	bone
23	chr1:166913000-166916200	Enhancers	Brain Germinal Matrix	brain
24	chr1:166913000-166916400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:166913000-166916400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr1:166913000-166922200	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr1:166913400-166914400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr1:166913400-166914400	Enhancers	Brain Cingulate Gyrus	brain
29	chr1:166913400-166914600	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr1:166913400-166915200	Enhancers	Primary hematopoietic stem cells	blood
31	chr1:166913400-166915200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr1:166913400-166915200	Enhancers	Fetal Thymus	thymus
33	chr1:166913400-166915400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr1:166913400-166922000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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