Variant report

Variant	rs534604825
Chromosome Location	chr1:59156610-59156611
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59153434..59155685-chr1:59156385..59160435,3	K562	blood:
2	chr1:59154836..59157699-chr1:59248547..59250761,2	MCF-7	breast:
3	chr1:59033300..59036238-chr1:59156402..59159118,2	MCF-7	breast:
4	chr1:59155488..59157004-chr1:59164254..59165910,2	MCF-7	breast:
5	chr1:59156469..59157978-chr1:59164328..59165864,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177606	Chromatin interaction
ENSG00000162601	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv822865	chr1:59155367-59156804	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv819698	chr1:59155397-59157255	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv822876	chr1:59155504-59156804	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59118200-59163400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:59119800-59162200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:59119800-59163200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:59121000-59161200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:59121400-59161000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:59121600-59161200	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:59121600-59161200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr1:59122400-59159400	Weak transcription	Right Ventricle	heart
9	chr1:59123800-59161800	Strong transcription	Dnd41	blood
10	chr1:59125000-59162200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:59125600-59161200	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr1:59129200-59161000	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr1:59131200-59161000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:59131200-59161000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:59139600-59162800	Weak transcription	Fetal Brain Male	brain
16	chr1:59139800-59159000	Weak transcription	Small Intestine	intestine
17	chr1:59139800-59162000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:59140200-59158800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr1:59140400-59157800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr1:59141200-59158800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr1:59141800-59158600	Weak transcription	NHLF	lung
22	chr1:59143600-59160600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:59144600-59161800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr1:59146600-59163200	Strong transcription	Osteobl	bone
25	chr1:59148000-59161000	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr1:59148000-59164000	Weak transcription	A549	lung
27	chr1:59148200-59157800	Weak transcription	Colonic Mucosa	Colon
28	chr1:59148200-59164400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr1:59149200-59161000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr1:59149400-59160200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:59149800-59157800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr1:59149800-59158000	Weak transcription	Fetal Lung	lung
33	chr1:59149800-59160000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:59150000-59157000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr1:59150000-59158000	Weak transcription	Fetal Kidney	kidney
36	chr1:59151000-59163200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:59151200-59157800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr1:59151400-59161000	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr1:59151400-59161200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr1:59151400-59161400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr1:59151600-59160000	Strong transcription	NHDF-Ad	bronchial
42	chr1:59151800-59164400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:59152000-59161000	Weak transcription	Brain Substantia Nigra	brain
44	chr1:59152200-59163200	Strong transcription	Primary B cells from peripheral blood	blood
45	chr1:59153000-59157000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr1:59153000-59160600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr1:59153000-59161200	Strong transcription	HUVEC	blood vessel
48	chr1:59153200-59157800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr1:59153200-59161200	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr1:59153400-59162600	Strong transcription	Monocytes-CD14+_RO01746	blood

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