Variant report

Variant	rs534620993
Chromosome Location	chr6:27728438-27728439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27015857..27017940-chr6:27726768..27728788,2	K562	blood:
2	chr6:27598999..27601742-chr6:27728041..27730837,2	K562	blood:
3	chr6:27476075..27477627-chr6:27726656..27728768,2	MCF-7	breast:
4	chr6:27720750..27725347-chr6:27727186..27730834,4	MCF-7	breast:
5	chr6:27161961..27163515-chr6:27727995..27729647,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIST1H2AI-1	chr6:27728356-27728470	XLOC_005221

Variant related genes	Relation type
ENSG00000238648	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv601205	chr6:27656255-27730064	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
7	nsv970093	chr6:27728265-27729165	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27725600-27729400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:27725600-27730200	Weak transcription	NHEK	skin
3	chr6:27725600-27743000	Weak transcription	Right Atrium	heart
4	chr6:27725800-27728800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:27725800-27728800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:27726000-27728600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:27726000-27728800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:27726000-27729200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:27726400-27733000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:27726400-27738600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:27726600-27729400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:27726600-27729600	Enhancers	K562	blood
13	chr6:27727200-27730200	Weak transcription	Fetal Intestine Small	intestine
14	chr6:27727600-27729600	Flanking Active TSS	GM12878-XiMat	blood
15	chr6:27727800-27729000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:27728000-27728800	Enhancers	Osteobl	bone
17	chr6:27728200-27728800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:27728200-27729400	Enhancers	HMEC	breast
19	chr6:27728400-27728600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:27728400-27728600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:27728400-27729000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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