Variant report

Variant	rs534633105
Chromosome Location	chr12:117088266-117088267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3492852	chr12:117086484-117088507	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
2	esv7478	chr12:117086655-117088382	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
3	esv3492896	chr12:117086740-117088304	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	esv3492874	chr12:117086802-117088270	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	esv3209	chr12:117086820-117088319	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
6	esv3492885	chr12:117086897-117088549	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv1823873	chr12:117087267-117090452	Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv560328	chr12:117087267-117090452	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv560329	chr12:117087267-117093237	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1794859	chr12:117087267-117103935	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv560334	chr12:117087369-117090452	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv560338	chr12:117087424-117090452	Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv560341	chr12:117087497-117090452	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv560342	chr12:117087497-117093237	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv560343	chr12:117087497-117096007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv560345	chr12:117087567-117090452	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1010837	chr12:117087670-117088320	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
18	nsv826521	chr12:117087670-117088320	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117084000-117088400	Weak transcription	Lung	lung
2	chr12:117084000-117093200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:117087800-117088600	Enhancers	Liver	Liver
4	chr12:117087800-117089400	Enhancers	Fetal Thymus	thymus
5	chr12:117088000-117088400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr12:117088000-117088400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:117088000-117088400	Enhancers	Pancreas	Pancrea
8	chr12:117088000-117088400	Active TSS	Hela-S3	cervix
9	chr12:117088000-117088600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr12:117088000-117088600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:117088000-117088600	Enhancers	Adipose Nuclei	Adipose
12	chr12:117088000-117089400	Enhancers	Dnd41	blood
13	chr12:117088200-117088400	Enhancers	Fetal Muscle Trunk	muscle
14	chr12:117088200-117088600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr12:117088200-117088600	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr12:117088200-117088600	Enhancers	Left Ventricle	heart
17	chr12:117088200-117088600	Enhancers	Right Atrium	heart
18	chr12:117088200-117088600	Enhancers	HepG2	liver
19	chr12:117088200-117089400	Enhancers	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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