Variant report

Variant	rs534649895
Chromosome Location	chr13:39584404-39584405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:39584395..39587085-chr13:39611673..39614003,2	MCF-7	breast:
2	chr13:39583306..39585732-chr13:39594165..39596602,2	K562	blood:
3	chr13:39581808..39584670-chr13:39588176..39590668,3	K562	blood:
4	chr13:39581567..39584670-chr13:39588176..39591409,3	K562	blood:

Variant related genes	Relation type
ENSG00000188811	Chromatin interaction
ENSG00000120685	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753553	chr13:39526600-39649000	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv977227	chr13:39584329-39585449	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39572200-39584600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr13:39573400-39584800	Weak transcription	K562	blood
3	chr13:39574600-39585000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:39577000-39584600	Weak transcription	Left Ventricle	heart
5	chr13:39579000-39585000	Weak transcription	Gastric	stomach
6	chr13:39580200-39584600	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:39580200-39584800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:39580200-39585000	Weak transcription	Fetal Stomach	stomach
9	chr13:39580200-39585000	Weak transcription	NH-A	brain
10	chr13:39580400-39584600	Weak transcription	Fetal Brain Female	brain
11	chr13:39580400-39585000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:39580400-39585000	Weak transcription	Lung	lung
13	chr13:39580800-39584800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr13:39580800-39584800	Weak transcription	Colon Smooth Muscle	Colon
15	chr13:39580800-39586200	Weak transcription	Colonic Mucosa	Colon
16	chr13:39581000-39584600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr13:39581000-39584600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr13:39581200-39584600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr13:39581200-39585000	Weak transcription	Aorta	Aorta
20	chr13:39581200-39585000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr13:39581200-39585000	Weak transcription	Thymus	Thymus
22	chr13:39581400-39584600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr13:39581400-39584600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr13:39581400-39584600	Weak transcription	A549	lung
25	chr13:39581400-39584600	Weak transcription	HMEC	breast
26	chr13:39581400-39584600	Weak transcription	NHEK	skin
27	chr13:39581400-39585400	Weak transcription	Fetal Intestine Small	intestine
28	chr13:39581600-39584600	Weak transcription	HepG2	liver
29	chr13:39581600-39585000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr13:39581600-39590800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:39581600-39592000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr13:39581600-39592400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr13:39581800-39584600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr13:39581800-39585000	Weak transcription	Esophagus	oesophagus
35	chr13:39581800-39585000	Weak transcription	Spleen	Spleen
36	chr13:39581800-39585400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:39581800-39589400	Strong transcription	Brain Germinal Matrix	brain
38	chr13:39581800-39592200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr13:39581800-39593200	Strong transcription	HSMM	muscle
40	chr13:39581800-39597000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr13:39582000-39584600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr13:39582000-39584800	Weak transcription	HSMMtube	muscle
43	chr13:39582000-39585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr13:39582000-39585000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr13:39582000-39588000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr13:39582000-39596600	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr13:39582000-39608200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr13:39582200-39584600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr13:39582200-39584600	Weak transcription	HUVEC	blood vessel
50	chr13:39582200-39590800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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