Variant report

Variant rs534679909
Chromosome Location chr12:57854201-57854202
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:57852400-57854600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
2 chr12:57852400-57856600 Active TSS ES-I3 Cell Line embryonic stem cell
3 chr12:57852400-57856800 Active TSS HUES64 Cell Line embryonic stem cell
4 chr12:57852600-57854600 Active TSS Psoas Muscle Psoas
5 chr12:57852600-57856600 Active TSS H9 Cell Line embryonic stem cell
6 chr12:57852600-57856600 Flanking Active TSS Primary B cells from cord blood blood
7 chr12:57852800-57854400 Active TSS Primary T killer naive cells fromperipheralblood blood
8 chr12:57852800-57854400 Active TSS Ovary ovary
9 chr12:57852800-57854400 Active TSS Small Intestine intestine
10 chr12:57852800-57854600 Active TSS Left Ventricle heart
11 chr12:57852800-57854800 Active TSS Right Atrium heart
12 chr12:57852800-57856400 Active TSS HUES48 Cell Line embryonic stem cell
13 chr12:57852800-57856600 Active TSS H1 Cell Line embryonic stem cell
14 chr12:57852800-57856600 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr12:57852800-57856600 Active TSS iPS-18 Cell Line embryonic stem cell
16 chr12:57852800-57856600 Active TSS iPS-20b Cell Line embryonic stem cell
17 chr12:57852800-57856600 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
18 chr12:57852800-57856600 Active TSS Aorta Aorta
19 chr12:57853000-57854400 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr12:57853000-57854400 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr12:57853000-57854400 Active TSS Rectal Smooth Muscle rectum
22 chr12:57853000-57854600 Active TSS Right Ventricle heart
23 chr12:57853000-57856600 Active TSS HUES6 Cell Line embryonic stem cell
24 chr12:57853000-57856600 Active TSS A549 lung
25 chr12:57853000-57856800 Active TSS Brain Substantia Nigra brain
26 chr12:57853000-57856800 Active TSS Fetal Kidney kidney
27 chr12:57853200-57854400 Active TSS Colonic Mucosa Colon
28 chr12:57853400-57854600 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr12:57853400-57854600 Active TSS NH-A brain
30 chr12:57853400-57856400 Active TSS NHLF lung
31 chr12:57853400-57856600 Active TSS iPS-15b Cell Line embryonic stem cell
32 chr12:57853800-57854400 Weak transcription Esophagus oesophagus
33 chr12:57853800-57854400 Enhancers Placenta Placenta
34 chr12:57853800-57854400 Weak transcription Pancreas Pancrea
35 chr12:57853800-57854400 Weak transcription HSMMtube muscle
36 chr12:57853800-57854600 Bivalent Enhancer Primary T cells fromperipheralblood blood
37 chr12:57853800-57854600 Enhancers Primary T helper naive cells from peripheral blood blood
38 chr12:57853800-57854600 Enhancers Primary mononuclear cells fromperipheralblood Blood
39 chr12:57853800-57854600 Weak transcription Lung lung
40 chr12:57853800-57854800 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr12:57853800-57854800 Enhancers Liver Liver
42 chr12:57853800-57854800 Enhancers Fetal Heart heart
43 chr12:57853800-57855000 Bivalent Enhancer Primary neutrophils fromperipheralblood blood
44 chr12:57853800-57855000 Enhancers Placenta Amnion Placenta Amnion
45 chr12:57853800-57855800 Weak transcription Gastric stomach
46 chr12:57854000-57854400 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
47 chr12:57854000-57854400 Flanking Active TSS Cortex derived primary cultured neurospheres brain
48 chr12:57854000-57854400 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
49 chr12:57854000-57854400 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
50 chr12:57854000-57854400 Flanking Active TSS Brain Angular Gyrus brain

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