Variant report

Variant	rs534682670
Chromosome Location	chr14:39562942-39562943
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:39562910-39563368	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
SEC23A	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv3338779	chr14:39562676-39564724	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39525600-39565600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr14:39526400-39563200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:39526800-39566600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:39527000-39565400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:39528000-39565400	Strong transcription	Placenta	Placenta
6	chr14:39528000-39565600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr14:39528600-39566400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:39529200-39566600	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:39529600-39564200	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr14:39529800-39566400	Weak transcription	Fetal Heart	heart
11	chr14:39531200-39569200	Weak transcription	Stomach Mucosa	stomach
12	chr14:39532000-39565400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:39534200-39566600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr14:39534600-39566800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:39538200-39565200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:39538200-39565200	Strong transcription	HUVEC	blood vessel
17	chr14:39538600-39566400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:39539000-39566600	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr14:39539200-39565400	Strong transcription	Duodenum Mucosa	Duodenum
20	chr14:39546600-39565400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr14:39549200-39565400	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr14:39549200-39565600	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr14:39549200-39565600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr14:39549400-39565400	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr14:39549400-39565400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr14:39550600-39565400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr14:39550800-39565400	Strong transcription	Primary B cells from peripheral blood	blood
28	chr14:39551000-39565000	Strong transcription	Stomach Smooth Muscle	stomach
29	chr14:39554200-39571200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:39554800-39571600	Weak transcription	K562	blood
31	chr14:39555200-39571600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:39555800-39569000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr14:39556800-39566200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr14:39556800-39566800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr14:39557200-39566400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr14:39557400-39565400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:39557600-39565400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:39558000-39565400	Strong transcription	Osteobl	bone
39	chr14:39558200-39565200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr14:39558400-39565200	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr14:39558400-39565400	Strong transcription	Adipose Nuclei	Adipose
42	chr14:39558400-39565400	Strong transcription	NHDF-Ad	bronchial
43	chr14:39558400-39566000	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr14:39558600-39564200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr14:39558600-39564200	Strong transcription	Hela-S3	cervix
46	chr14:39558600-39564600	Strong transcription	HSMMtube	muscle
47	chr14:39558600-39564800	Strong transcription	Fetal Thymus	thymus
48	chr14:39558600-39564800	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr14:39558600-39565000	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr14:39558600-39565200	Strong transcription	Primary B cells from cord blood	blood

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