Variant report

Variant	rs534689505
Chromosome Location	chr3:179383980-179383981
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179380173..179383010-chr3:179383276..179385803,2	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4140	chr3:179383961-179429704	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179372600-179384200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:179372600-179403200	Weak transcription	Primary B cells from cord blood	blood
3	chr3:179372600-179408400	Weak transcription	Fetal Intestine Small	intestine
4	chr3:179372600-179425200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:179373200-179384200	Weak transcription	NHLF	lung
6	chr3:179374600-179408000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:179374800-179384000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:179375000-179389200	Weak transcription	Hela-S3	cervix
9	chr3:179376000-179384200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:179376600-179384000	Weak transcription	Fetal Stomach	stomach
11	chr3:179376600-179400800	Weak transcription	Dnd41	blood
12	chr3:179377000-179384000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:179377000-179384000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:179379200-179385200	Enhancers	Fetal Heart	heart
15	chr3:179380400-179384400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:179380600-179418800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr3:179381400-179384000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:179381600-179384000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:179381600-179384200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:179381800-179384000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:179381800-179384000	Weak transcription	Lung	lung
22	chr3:179381800-179384000	Weak transcription	Pancreas	Pancrea
23	chr3:179382200-179385800	Enhancers	Fetal Muscle Leg	muscle
24	chr3:179382600-179384000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:179382800-179384200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr3:179383200-179384000	Weak transcription	Brain Germinal Matrix	brain
27	chr3:179383200-179384000	Enhancers	HSMMtube	muscle
28	chr3:179383200-179384800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:179383400-179384800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:179383400-179384800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:179383400-179386600	Enhancers	Left Ventricle	heart
32	chr3:179383600-179384000	Weak transcription	HepG2	liver
33	chr3:179383600-179384600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:179383600-179385000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr3:179383600-179385000	Enhancers	Brain Substantia Nigra	brain
36	chr3:179383800-179384000	Enhancers	Brain Angular Gyrus	brain
37	chr3:179383800-179384000	Enhancers	Brain Anterior Caudate	brain
38	chr3:179383800-179384000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr3:179383800-179384400	Enhancers	H9 Cell Line	embryonic stem cell
40	chr3:179383800-179384400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:179383800-179384600	Enhancers	HUVEC	blood vessel
42	chr3:179383800-179384600	Enhancers	Osteobl	bone
43	chr3:179383800-179384800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr3:179383800-179384800	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr3:179383800-179384800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr3:179383800-179384800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr3:179383800-179384800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:179383800-179384800	Enhancers	Muscle Satellite Cultured Cells	--
49	chr3:179383800-179384800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:179383800-179384800	Enhancers	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links