Variant report

Variant	rs534726199
Chromosome Location	chr1:169292945-169292946
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv429913	chr1:169177019-169296744	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1010010	chr1:169189586-169347545	Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv872531	chr1:169191860-169388193	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1012919	chr1:169200982-169324750	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv872532	chr1:169275630-169363203	Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv946498	chr1:169292477-169293729	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169259600-169294400	Weak transcription	Pancreas	Pancrea
2	chr1:169260400-169310400	Weak transcription	Fetal Stomach	stomach
3	chr1:169264400-169294400	Weak transcription	Left Ventricle	heart
4	chr1:169265000-169320400	Weak transcription	Aorta	Aorta
5	chr1:169270200-169336400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:169271800-169297200	Weak transcription	Psoas Muscle	Psoas
7	chr1:169273600-169312400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:169276800-169304600	Weak transcription	Ovary	ovary
9	chr1:169277000-169294600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:169277000-169306200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:169279000-169293800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:169279000-169295600	Weak transcription	Adipose Nuclei	Adipose
13	chr1:169279200-169296000	Weak transcription	Primary T cells from cord blood	blood
14	chr1:169280200-169304600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:169281600-169294400	Weak transcription	Fetal Intestine Small	intestine
16	chr1:169281600-169294400	Weak transcription	Lung	lung
17	chr1:169281600-169306600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:169281800-169295400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr1:169282000-169293800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:169282000-169294600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr1:169282000-169306800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:169282200-169293600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:169282200-169295800	Weak transcription	NHEK	skin
24	chr1:169282400-169295600	Weak transcription	NH-A	brain
25	chr1:169283400-169293400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:169286200-169295400	Weak transcription	HUVEC	blood vessel
27	chr1:169287400-169294400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr1:169288600-169297200	Weak transcription	Small Intestine	intestine
29	chr1:169291000-169295600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:169291000-169295600	Weak transcription	HMEC	breast
31	chr1:169291000-169295800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr1:169291000-169296200	Weak transcription	NHDF-Ad	bronchial
33	chr1:169291000-169313200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:169291200-169293400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:169291200-169296000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:169291400-169293400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:169291400-169293600	Weak transcription	A549	lung
38	chr1:169291400-169296000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr1:169291400-169296000	Weak transcription	Osteobl	bone
40	chr1:169291600-169295600	Weak transcription	Hela-S3	cervix
41	chr1:169292400-169294800	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr1:169292800-169293200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr1:169292800-169294000	Enhancers	H1 Cell Line	embryonic stem cell

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