Variant report

Variant	rs534734
Chromosome Location	chr11:85532641-85532642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85373477..85376414-chr11:85531223..85532903,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137504	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1213585	1.00[EUR][1000 genomes]
rs12418473	0.84[AMR][1000 genomes]
rs17209625	0.84[AMR][1000 genomes]
rs290188	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs290189	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs532018	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs542633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs547361	1.00[EUR][1000 genomes]
rs562732	0.84[AMR][1000 genomes]
rs636735	1.00[EUR][1000 genomes]
rs639542	1.00[EUR][1000 genomes]
rs671994	1.00[EUR][1000 genomes]
rs7945502	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1047147	chr11:85459235-85594800	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv541114	chr11:85459235-85594800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	esv2762927	chr11:85468051-85559618	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1052737	chr11:85477084-85554914	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv541115	chr11:85477084-85554914	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1049630	chr11:85486866-85535123	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
13	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
14	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85522600-85533200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:85524800-85537200	Weak transcription	Small Intestine	intestine
3	chr11:85527200-85533200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:85528200-85532800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:85528400-85532800	Weak transcription	NHLF	lung
6	chr11:85530000-85533800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:85531000-85535000	Weak transcription	Fetal Lung	lung
8	chr11:85531600-85532800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:85532000-85535400	Enhancers	Stomach Mucosa	stomach
10	chr11:85532200-85532800	Enhancers	A549	lung
11	chr11:85532200-85534200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:85532400-85533000	Enhancers	Hela-S3	cervix
13	chr11:85532400-85533200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:85532400-85533200	Enhancers	NH-A	brain
15	chr11:85532400-85533400	Enhancers	Pancreas	Pancrea
16	chr11:85532400-85534000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr11:85532400-85534000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:85532400-85534200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:85532400-85534200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:85532400-85534200	Enhancers	Osteobl	bone
21	chr11:85532400-85534400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:85532400-85534400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr11:85532400-85534400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:85532400-85534400	Enhancers	HMEC	breast
25	chr11:85532400-85535200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:85532400-85538800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr11:85532400-85540000	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr11:85532600-85533200	Enhancers	Aorta	Aorta
29	chr11:85532600-85534400	Enhancers	HSMM	muscle
30	chr11:85532600-85534600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr11:85532600-85535400	Enhancers	NHDF-Ad	bronchial
32	chr11:85532600-85539200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr11:85532600-85539600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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