Variant report

Variant	rs534754882
Chromosome Location	chr15:74888251-74888252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:74888076-74888420	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:74887963-74888601	GM12892	blood:	n/a	n/a
3	POLR2A	chr15:74887596-74889093	GM12878	blood:	n/a	n/a
4	POLR2A	chr15:74888026-74889074	GM12891	blood:	n/a	n/a
5	POLR2A	chr15:74888063-74888342	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74885278..74889186-chr15:74890286..74893326,4	K562	blood:
2	chr15:74885692..74889192-chr15:74889315..74893477,4	MCF-7	breast:

Variant related genes	Relation type
ARID3B	TF binding region
CLK3	TF binding region
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	esv1812223	chr15:74869438-74948063	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	esv1814078	chr15:74884447-74948063	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv457204	chr15:74885091-74948063	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv569991	chr15:74885091-74948063	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv542434	chr15:74885329-74929552	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1047943	chr15:74885329-74940857	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
10	nsv976950	chr15:74888247-74891372	Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74840600-74890400	Weak transcription	Stomach Mucosa	stomach
2	chr15:74845800-74890400	Weak transcription	A549	lung
3	chr15:74854800-74888600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr15:74859000-74888600	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:74860400-74889000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:74860800-74888400	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:74861200-74889800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:74863600-74890800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:74863800-74890400	Weak transcription	Psoas Muscle	Psoas
10	chr15:74864400-74888400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:74866800-74890800	Weak transcription	Ovary	ovary
12	chr15:74876600-74888800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:74877400-74890400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:74877800-74888800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:74878000-74890200	Weak transcription	K562	blood
16	chr15:74878200-74888400	Strong transcription	Liver	Liver
17	chr15:74881000-74890400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:74881200-74888800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:74881200-74889600	Weak transcription	Fetal Heart	heart
20	chr15:74881200-74890400	Weak transcription	Fetal Kidney	kidney
21	chr15:74881200-74892200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:74881400-74888400	Strong transcription	Gastric	stomach
23	chr15:74881400-74889800	Strong transcription	Fetal Stomach	stomach
24	chr15:74881400-74890400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:74881400-74890400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:74881400-74890400	Weak transcription	Fetal Brain Male	brain
27	chr15:74881400-74892200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:74881600-74888400	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr15:74881600-74890400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:74881800-74888400	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:74881800-74888400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr15:74881800-74888400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:74881800-74888400	Strong transcription	Brain Cingulate Gyrus	brain
34	chr15:74881800-74888800	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr15:74881800-74888800	Strong transcription	Spleen	Spleen
36	chr15:74881800-74890400	Weak transcription	HSMM	muscle
37	chr15:74882000-74888400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:74882000-74890800	Weak transcription	Right Atrium	heart
39	chr15:74882200-74888400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:74882200-74888600	Strong transcription	Lung	lung
41	chr15:74882200-74890400	Weak transcription	NH-A	brain
42	chr15:74882400-74888400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:74882400-74888600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:74882400-74889800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:74882400-74890000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:74882600-74888400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr15:74882600-74888400	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr15:74882600-74888400	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:74882600-74888400	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr15:74882600-74890200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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