Variant report

Variant	rs534775963
Chromosome Location	chr4:88031983-88031984
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr4:88031935-88031988	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88030647..88032451-chr4:88032787..88035472,2	MCF-7	breast:

Variant related genes	Relation type
AFF1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999176	chr4:87869996-88098136	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv998335	chr4:87869996-88104414	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1001017	chr4:87872160-88087003	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv537166	chr4:87872160-88087003	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv879525	chr4:87964363-88033352	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3361742	chr4:88031428-88033676	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3515144	chr4:88031605-88032493	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87995400-88037800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:88011800-88032800	Weak transcription	Colonic Mucosa	Colon
3	chr4:88015800-88035400	Weak transcription	Right Ventricle	heart
4	chr4:88018600-88034200	Weak transcription	Fetal Stomach	stomach
5	chr4:88019000-88072200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:88021000-88034200	Weak transcription	Spleen	Spleen
7	chr4:88021600-88036600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:88021600-88037800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:88021800-88036000	Weak transcription	Brain Angular Gyrus	brain
10	chr4:88025600-88034200	Weak transcription	Lung	lung
11	chr4:88025600-88035600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:88025600-88035800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr4:88026200-88042200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr4:88026400-88042400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr4:88026400-88063600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:88026600-88033600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr4:88026600-88042200	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr4:88026600-88042600	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr4:88026600-88055600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr4:88026800-88032000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:88026800-88032800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr4:88026800-88035800	Weak transcription	Brain Substantia Nigra	brain
23	chr4:88027000-88032800	Weak transcription	Fetal Kidney	kidney
24	chr4:88027000-88033000	Weak transcription	Stomach Mucosa	stomach
25	chr4:88027000-88035400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr4:88027000-88037600	Strong transcription	Liver	Liver
27	chr4:88028400-88035800	Weak transcription	Psoas Muscle	Psoas
28	chr4:88028800-88032800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr4:88029200-88035400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr4:88029400-88034200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:88029600-88032800	Weak transcription	Ovary	ovary
32	chr4:88029600-88033000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:88029600-88033000	Weak transcription	Left Ventricle	heart
34	chr4:88029600-88034200	Weak transcription	Esophagus	oesophagus
35	chr4:88029600-88034200	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:88029600-88034200	Weak transcription	Gastric	stomach
37	chr4:88029600-88034400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr4:88029600-88035400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr4:88029600-88035800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr4:88029600-88035800	Weak transcription	Aorta	Aorta
41	chr4:88029600-88035800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr4:88029600-88035800	Weak transcription	Pancreas	Pancrea
43	chr4:88029600-88035800	Weak transcription	Right Atrium	heart
44	chr4:88029600-88036000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr4:88029600-88036200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:88029800-88032000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr4:88029800-88032800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr4:88029800-88033000	Weak transcription	NHEK	skin
49	chr4:88029800-88035800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr4:88029800-88037400	Weak transcription	Fetal Heart	heart

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