Variant report

Variant	rs534799889
Chromosome Location	chr1:172795402-172795403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172794864..172795940-chr1:173170762..173172112,10	MCF-7	breast:
2	chr1:172714289..172714906-chr1:172794894..172795766,2	MCF-7	breast:
3	chr1:172794787..172796035-chr1:173170815..173172252,9	MCF-7	breast:
4	chr1:172795250..172796219-chr1:173171117..173172150,4	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947552	chr1:172794244-172807477	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172788800-172797000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr1:172789000-172796600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:172789000-172797000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:172791200-172806200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172792000-172795600	Weak transcription	K562	blood
6	chr1:172793200-172795600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:172793600-172795600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:172793800-172795600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:172794800-172795800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:172794800-172796000	Enhancers	HSMM	muscle
11	chr1:172795000-172796200	Enhancers	Fetal Intestine Small	intestine
12	chr1:172795000-172797200	Enhancers	Dnd41	blood
13	chr1:172795200-172795600	Enhancers	Primary B cells from cord blood	blood
14	chr1:172795200-172795600	Active TSS	Brain Anterior Caudate	brain
15	chr1:172795200-172796000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr1:172795200-172796000	Enhancers	Primary B cells from peripheral blood	blood
17	chr1:172795200-172796000	Active TSS	Stomach Smooth Muscle	stomach
18	chr1:172795200-172796200	Enhancers	Colon Smooth Muscle	Colon
19	chr1:172795200-172796600	Enhancers	Primary hematopoietic stem cells	blood
20	chr1:172795200-172797400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr1:172795200-172797600	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr1:172795200-172797800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr1:172795400-172795600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr1:172795400-172795600	Active TSS	Brain Cingulate Gyrus	brain
25	chr1:172795400-172795600	Active TSS	Brain Hippocampus Middle	brain
26	chr1:172795400-172795600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:172795400-172795600	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr1:172795400-172795600	Enhancers	Ovary	ovary
29	chr1:172795400-172795600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
30	chr1:172795400-172795600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr1:172795400-172795600	Bivalent Enhancer	GM12878-XiMat	blood
32	chr1:172795400-172795600	Active TSS	HepG2	liver
33	chr1:172795400-172795600	Enhancers	Osteobl	bone
34	chr1:172795400-172795800	Enhancers	H1 Cell Line	embryonic stem cell
35	chr1:172795400-172795800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr1:172795400-172795800	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr1:172795400-172795800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr1:172795400-172795800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr1:172795400-172795800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr1:172795400-172795800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr1:172795400-172795800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr1:172795400-172795800	Flanking Active TSS	Liver	Liver
43	chr1:172795400-172795800	Flanking Active TSS	Brain Angular Gyrus	brain
44	chr1:172795400-172795800	Enhancers	Fetal Brain Male	brain
45	chr1:172795400-172795800	Enhancers	Fetal Kidney	kidney
46	chr1:172795400-172795800	Enhancers	Placenta	Placenta
47	chr1:172795400-172795800	Enhancers	Psoas Muscle	Psoas
48	chr1:172795400-172795800	Flanking Active TSS	Stomach Mucosa	stomach
49	chr1:172795400-172795800	Flanking Active TSS	A549	lung
50	chr1:172795400-172796000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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