Variant report

Variant	rs534799934
Chromosome Location	chr5:74405518-74405519
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74398898..74401626-chr5:74404084..74405845,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74404200-74405600	Enhancers	NHEK	skin
2	chr5:74404200-74405800	Enhancers	Hela-S3	cervix
3	chr5:74404200-74406200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr5:74404400-74405600	Enhancers	HMEC	breast
5	chr5:74404400-74405800	Enhancers	Primary T cells from cord blood	blood
6	chr5:74404400-74405800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:74405000-74405600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr5:74405000-74405800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:74405000-74405800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr5:74405000-74405800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr5:74405000-74405800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:74405000-74405800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr5:74405000-74405800	Enhancers	Fetal Thymus	thymus
14	chr5:74405000-74406200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr5:74405200-74405600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:74405200-74405600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:74405200-74405600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:74405200-74405800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr5:74405200-74405800	Enhancers	Thymus	Thymus
20	chr5:74405400-74405800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr5:74405400-74407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links