Variant report

Variant	rs534825742
Chromosome Location	chr2:46910122-46910123
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIGF-2	chr2:46909764-46910140	XLOC_002087

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014425	chr2:46670179-47033417	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv535678	chr2:46670179-47033417	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv873996	chr2:46670941-47065227	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1009735	chr2:46724523-46913152	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv533112	chr2:46800828-46959977	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
7	nsv873997	chr2:46821640-46984627	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv2548666	chr2:46909514-46911107	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv6555	chr2:46909911-46910673	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
10	esv2049503	chr2:46909940-46910664	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
11	esv3457655	chr2:46910038-46910537	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
12	esv3513191	chr2:46910045-46910558	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
13	esv3513190	chr2:46910056-46910556	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
14	esv3545	chr2:46910064-46910573	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
15	esv3513192	chr2:46910067-46910485	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
16	esv3457650	chr2:46910077-46910518	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
17	esv3513189	chr2:46910080-46910505	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
18	esv3457654	chr2:46910081-46910516	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
19	esv3457652	chr2:46910087-46910476	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
20	esv3409044	chr2:46910098-46910472	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
21	esv3513188	chr2:46910101-46910500	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
22	esv3457651	chr2:46910118-46910454	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:46906000-46911400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:46907400-46910800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:46907600-46911200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:46907600-46911400	Weak transcription	Osteobl	bone
5	chr2:46907800-46911400	Weak transcription	NHDF-Ad	bronchial
6	chr2:46907800-46911800	Enhancers	Primary B cells from peripheral blood	blood
7	chr2:46908400-46911200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:46908400-46911400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:46908400-46912400	Weak transcription	NHLF	lung
10	chr2:46909600-46910800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr2:46909600-46911200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:46909800-46911200	Weak transcription	GM12878-XiMat	blood
13	chr2:46910000-46911600	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links