Variant report

Variant	rs534841158
Chromosome Location	chr8:10940647-10940648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10925000-10941800	Weak transcription	Right Atrium	heart
2	chr8:10925600-10944400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:10935200-10943800	Weak transcription	Brain Anterior Caudate	brain
4	chr8:10937800-10941000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:10939600-10942400	Weak transcription	Pancreas	Pancrea
6	chr8:10940200-10941400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:10940400-10942400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:10940600-10940800	Enhancers	Gastric	stomach
9	chr8:10940600-10941200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:10940600-10941200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr8:10940600-10941400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:10940600-10941400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr8:10940600-10941800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr8:10940600-10943400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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