Variant report

Variant	rs534854146
Chromosome Location	chr11:74950442-74950443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:74950396-74950446	NHDF-neo	bronchial:	n/a
2	chr11:74950396-74950446	U87	brain:	n/a
3	chr11:74950396-74950446	HCT-116	colon:	n/a
4	chr11:74950396-74950446	HRCEpiC	kidney:	n/a
5	chr11:74950396-74950446	SK-N-SH_RA	brain:	n/a
6	chr11:74950396-74950446	AoSMC	blood vessel:	n/a
7	chr11:74950396-74950446	AG04450	lung:	fetal
8	chr11:74950396-74950446	CMK	blood:	n/a
9	chr11:74950396-74950446	HAEpiC	amniotic membrane:	n/a
10	chr11:74950396-74950446	GM12892	blood:	n/a
11	chr11:74950396-74950446	ProgFib	skin:	n/a
12	chr11:74950396-74950446	HMEC	breast:	n/a
13	chr11:74950396-74950446	HepG2	liver:	n/a
14	chr11:74950396-74950446	Jurkat	blood:	n/a
15	chr11:74950396-74950446	ovcar-3	ovarian:	n/a
16	chr11:74950396-74950446	HRPEpiC	eye:	n/a
17	chr11:74950396-74950446	PANC-1	pancreas:	n/a
18	chr11:74950396-74950446	LNCaP	prostate:	n/a
19	chr11:74950396-74950446	AG10803	skin:	n/a
20	chr11:74950396-74950446	Hela-S3	cervix:	n/a
21	chr11:74950396-74950446	NHBE	bronchial:	n/a
22	chr11:74950396-74950446	HCM	heart:	n/a
23	chr11:74950396-74950446	GM06990	blood:	n/a
24	chr11:74950396-74950446	HCF	heart:	n/a
25	chr11:74950396-74950446	SKMC	muscle:	n/a
26	chr11:74950396-74950446	MCF-7	breast:	n/a
27	chr11:74950396-74950446	HRE	kidney:	n/a
28	chr11:74950396-74950446	GM12878	blood:	n/a
29	chr11:74950396-74950446	H1-hESC	embryonic stem cell:	embryo
30	chr11:74950396-74950446	ECC-1	luminal epithelium:	n/a
31	chr11:74950396-74950446	SAEC	small airway:	n/a
32	chr11:74950396-74950446	HNPCEpiC	eye:	n/a
33	chr11:74950396-74950446	PFSK-1	brain:	n/a
34	chr11:74950396-74950446	HEK293	kidney:	embryo
35	chr11:74950396-74950446	HL-60	blood:	n/a
36	chr11:74950396-74950446	HPAEpiC	pulmonary alveolar:	n/a
37	chr11:74950396-74950446	RPTEC	kidney:	n/a
38	chr11:74950396-74950446	AG04449	skin:	fetal
39	chr11:74950396-74950446	BE2_C	brain:	n/a
40	chr11:74950396-74950446	HEEpiC	esophagus:	n/a
41	chr11:74950396-74950446	Hepatocyte	liver:	n/a
42	chr11:74950396-74950446	HCPEpiC	choroid plexus:	n/a
43	chr11:74950396-74950446	K562	blood:	n/a
44	chr11:74950396-74950446	HIPEpiC	eye:	n/a
45	chr11:74950396-74950446	AG09319	gingival:	n/a
46	chr11:74950396-74950446	A549	lung:	n/a
47	chr11:74950396-74950446	HUVEC	blood vessel:	n/a
48	chr11:74950396-74950446	IMR90	lung:	fetal
49	chr11:74950396-74950446	BJ	skin:	n/a
50	chr11:74950396-74950446	PrEC	prostate:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74923854..74925700-chr11:74949115..74951246,2	K562	blood:

No data

Variant related genes	Relation type
TPBGL	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
5	esv3338705	chr11:74950304-74954802	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74945400-74951600	Weak transcription	Ovary	ovary
2	chr11:74950000-74951200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:74950200-74951200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr11:74950200-74951200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr11:74950400-74950600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr11:74950400-74950600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr11:74950400-74950600	Enhancers	Brain Anterior Caudate	brain
8	chr11:74950400-74951000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
9	chr11:74950400-74951000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr11:74950400-74951200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links