Variant report

Variant	rs534857962
Chromosome Location	chr8:57844541-57844542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029443	chr8:57748114-58057656	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv3427025	chr8:57843674-57845453	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:57831000-57849600	Weak transcription	Pancreas	Pancrea
2	chr8:57842800-57844800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:57843200-57844600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:57843200-57844600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:57843200-57844600	Enhancers	Fetal Muscle Leg	muscle
6	chr8:57843200-57844600	Enhancers	Fetal Stomach	stomach
7	chr8:57843400-57844600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr8:57843400-57844600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:57843600-57844600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:57843600-57844600	Enhancers	Adipose Nuclei	Adipose
11	chr8:57843600-57852800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:57843800-57844600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr8:57843800-57844600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr8:57843800-57844800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:57844000-57844600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:57844000-57844600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:57844000-57844600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:57844000-57844600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr8:57844000-57844600	Enhancers	Brain Cingulate Gyrus	brain
20	chr8:57844000-57844800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr8:57844000-57844800	Enhancers	Fetal Lung	lung
22	chr8:57844000-57850000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:57844200-57844600	Enhancers	HUVEC	blood vessel
24	chr8:57844200-57844600	Flanking Active TSS	Osteobl	bone
25	chr8:57844400-57844600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:57844400-57844600	Flanking Active TSS	HSMMtube	muscle

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