Variant report

Variant	rs534859671
Chromosome Location	chr7:140009935-140009936
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:139875379..139877592-chr7:140008407..140010422,2	MCF-7	breast:
2	chr7:140009860..140010445-chr7:140095992..140096644,2	MCF-7	breast:
3	chr7:140009929..140010746-chr7:140096072..140096776,2	MCF-7	breast:
4	chr7:140009842..140010440-chr7:140096015..140096525,2	MCF-7	breast:
5	chr7:140004952..140007749-chr7:140008011..140010773,2	MCF-7	breast:
6	chr7:139875119..139878535-chr7:140008381..140012016,6	MCF-7	breast:
7	chr7:140000240..140002931-chr7:140009039..140011933,3	MCF-7	breast:
8	chr20:52811659..52812164-chr7:140009869..140010808,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv517812	chr7:140009332-140010108	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140003400-140010000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:140004600-140010200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:140004600-140011200	Enhancers	HepG2	liver
4	chr7:140004600-140015400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:140006000-140015400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:140007000-140011600	Weak transcription	Primary B cells from cord blood	blood
7	chr7:140007400-140010800	Enhancers	Ovary	ovary
8	chr7:140008400-140010000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:140008400-140014800	Weak transcription	Stomach Mucosa	stomach
10	chr7:140008800-140010400	Enhancers	Colon Smooth Muscle	Colon
11	chr7:140008800-140012200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr7:140009200-140010200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr7:140009200-140010800	Enhancers	A549	lung
14	chr7:140009400-140014800	Weak transcription	Colonic Mucosa	Colon
15	chr7:140009400-140015000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr7:140009800-140010200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:140009800-140011000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links