Variant report

Variant	rs534915900
Chromosome Location	chr4:88267611-88267612
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870296	chr4:88173534-88295927	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv4412	chr4:88237813-88283368	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv3513966	chr4:88267269-88274737	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2559237	chr4:88267456-88274841	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3388226	chr4:88267578-88275176	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88253800-88274600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:88254800-88311800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:88255000-88268200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:88255000-88292400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:88255200-88267800	Strong transcription	Duodenum Mucosa	Duodenum
6	chr4:88255200-88274400	Weak transcription	GM12878-XiMat	blood
7	chr4:88255200-88285600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr4:88255200-88293800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:88255800-88278200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:88256000-88274800	Weak transcription	A549	lung
11	chr4:88256200-88292800	Weak transcription	Gastric	stomach
12	chr4:88256200-88310600	Weak transcription	Right Ventricle	heart
13	chr4:88257000-88291000	Weak transcription	HUVEC	blood vessel
14	chr4:88257800-88311800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:88258000-88278000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:88258000-88285400	Weak transcription	Small Intestine	intestine
17	chr4:88259200-88277200	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:88259200-88283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:88261000-88280000	Weak transcription	Left Ventricle	heart
20	chr4:88261000-88283200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:88261200-88285000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr4:88262200-88280200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:88262600-88274200	Weak transcription	K562	blood
24	chr4:88262600-88274400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:88263000-88274600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr4:88263000-88274600	Weak transcription	Colonic Mucosa	Colon
27	chr4:88263000-88277000	Weak transcription	Lung	lung
28	chr4:88263000-88277000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:88263000-88278000	Weak transcription	Stomach Mucosa	stomach
30	chr4:88263000-88280000	Weak transcription	Pancreas	Pancrea
31	chr4:88263200-88281600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr4:88263600-88274600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr4:88264000-88277000	Weak transcription	HSMM	muscle
34	chr4:88264200-88285600	Weak transcription	Spleen	Spleen
35	chr4:88264400-88279800	Weak transcription	Hela-S3	cervix
36	chr4:88265400-88267800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr4:88265400-88267800	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr4:88265600-88267800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
39	chr4:88265600-88268000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr4:88265600-88268000	Strong transcription	Fetal Thymus	thymus
41	chr4:88265800-88268000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:88265800-88268000	Strong transcription	Liver	Liver
43	chr4:88265800-88268200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr4:88266000-88268000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
45	chr4:88266000-88268200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr4:88266200-88268000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:88266200-88285000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr4:88266400-88275000	Weak transcription	Aorta	Aorta
49	chr4:88266400-88278200	Weak transcription	Brain Angular Gyrus	brain
50	chr4:88266400-88292200	Weak transcription	Fetal Brain Male	brain

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