Variant report

Variant	rs534926752
Chromosome Location	chr3:46423261-46423262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46414355..46417313-chr3:46422093..46423831,2	K562	blood:
2	chr3:46420928..46423796-chr3:46462092..46464094,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2756988	chr3:46419634-46444794	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759146	chr3:46419634-46444794	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv10267	chr3:46423130-46440713	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46404400-46424600	Weak transcription	Spleen	Spleen
2	chr3:46420400-46425400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:46420400-46427600	Weak transcription	Pancreas	Pancrea
4	chr3:46421400-46423400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:46421400-46426000	Enhancers	Fetal Lung	lung
6	chr3:46421600-46424000	Enhancers	Fetal Brain Male	brain
7	chr3:46421800-46425000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:46422000-46423400	Enhancers	Small Intestine	intestine
9	chr3:46422000-46423600	Enhancers	Adipose Nuclei	Adipose
10	chr3:46422000-46423800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:46422000-46424000	Enhancers	Ovary	ovary
12	chr3:46422000-46425200	Enhancers	Colonic Mucosa	Colon
13	chr3:46422200-46425400	Enhancers	Stomach Mucosa	stomach
14	chr3:46422200-46435200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:46422400-46423600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:46422400-46423800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr3:46422400-46423800	Enhancers	NHEK	skin
18	chr3:46422400-46424600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:46422400-46424800	Enhancers	Dnd41	blood
20	chr3:46422400-46425400	Weak transcription	Thymus	Thymus
21	chr3:46422400-46426400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr3:46422400-46427800	Weak transcription	Esophagus	oesophagus
23	chr3:46422400-46438600	Weak transcription	Psoas Muscle	Psoas
24	chr3:46422600-46423400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:46422600-46423400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr3:46422600-46424400	Weak transcription	Fetal Intestine Small	intestine
27	chr3:46422600-46424600	Weak transcription	Placenta	Placenta
28	chr3:46422600-46424800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:46422600-46425000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr3:46422600-46425000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr3:46422600-46425000	Weak transcription	Brain Substantia Nigra	brain
32	chr3:46422600-46427600	Weak transcription	Hela-S3	cervix
33	chr3:46422600-46435200	Weak transcription	Right Atrium	heart
34	chr3:46422800-46424400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:46422800-46424400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr3:46422800-46424400	Weak transcription	Fetal Thymus	thymus
37	chr3:46422800-46424600	Weak transcription	GM12878-XiMat	blood
38	chr3:46422800-46424800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr3:46422800-46424800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr3:46422800-46424800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:46422800-46424800	Weak transcription	HMEC	breast
42	chr3:46422800-46429400	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr3:46423000-46423400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr3:46423000-46424000	Weak transcription	Primary B cells from peripheral blood	blood
45	chr3:46423000-46424200	Weak transcription	Primary B cells from cord blood	blood
46	chr3:46423000-46424400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr3:46423000-46424400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr3:46423000-46424400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr3:46423000-46424400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:46423000-46424400	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links