Variant report

Variant	rs534969138
Chromosome Location	chr3:140770457-140770458
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:33477684..33478239-chr3:140770419..140770939,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432488	chr3:140752302-140790302	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3342822	chr3:140769087-140772135	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv591889	chr3:140769896-140778138	Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140769200-140770800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
2	chr3:140769400-140770600	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
3	chr3:140769400-140770600	Enhancers	Esophagus	oesophagus
4	chr3:140769400-140770800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:140769400-140770800	Enhancers	Liver	Liver
6	chr3:140769400-140771000	Bivalent/Poised TSS	NHEK	skin
7	chr3:140769400-140771200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr3:140769400-140771200	Active TSS	Fetal Brain Female	brain
9	chr3:140769400-140771400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
10	chr3:140769400-140771600	Bivalent Enhancer	Spleen	Spleen
11	chr3:140769400-140771800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:140769400-140772200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:140769400-140772400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:140769400-140772600	Active TSS	Fetal Kidney	kidney
15	chr3:140769600-140770600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:140769600-140770600	Active TSS	Right Ventricle	heart
17	chr3:140769600-140770800	Active TSS	HSMM	muscle
18	chr3:140769600-140771000	Active TSS	H1 Cell Line	embryonic stem cell
19	chr3:140769600-140771000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:140769600-140771000	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr3:140769600-140771000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
22	chr3:140769600-140771000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
23	chr3:140769600-140771000	Bivalent/Poised TSS	Brain Substantia Nigra	brain
24	chr3:140769600-140771000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
25	chr3:140769600-140771200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr3:140769600-140771200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
27	chr3:140769600-140771200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:140769600-140771200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:140769600-140771400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:140769600-140771400	Bivalent/Poised TSS	A549	lung
31	chr3:140769600-140771600	Active TSS	Pancreas	Pancrea
32	chr3:140769600-140771800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:140769600-140772000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr3:140769600-140772000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
35	chr3:140769600-140772000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr3:140769600-140772000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:140769600-140772000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
38	chr3:140769600-140772000	Active TSS	Left Ventricle	heart
39	chr3:140769600-140772000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
40	chr3:140769600-140772200	Active TSS	Right Atrium	heart
41	chr3:140769800-140770600	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr3:140769800-140770600	Bivalent/Poised TSS	Colonic Mucosa	Colon
43	chr3:140769800-140770600	Enhancers	Gastric	stomach
44	chr3:140769800-140770800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr3:140769800-140770800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:140769800-140770800	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
47	chr3:140769800-140770800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
48	chr3:140769800-140771000	Active TSS	HUES64 Cell Line	embryonic stem cell
49	chr3:140769800-140771000	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr3:140769800-140771000	Active TSS	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links