Variant report

Variant	rs534982528
Chromosome Location	chr5:114757635-114757636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114755931..114757845-chr5:114758052..114760367,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv2609149	chr5:114755821-114758499	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv471786	chr5:114756143-114757904	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3469754	chr5:114756153-114758181	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1933109	chr5:114756302-114758101	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3361244	chr5:114756303-114758901	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3523136	chr5:114756366-114757977	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3469756	chr5:114756401-114757997	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3523138	chr5:114756405-114758000	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3523137	chr5:114756429-114757926	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3469755	chr5:114756435-114757963	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv513257	chr5:114756437-114757906	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3469753	chr5:114756437-114757967	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3523134	chr5:114756448-114757946	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3469750	chr5:114756449-114757917	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3523139	chr5:114756455-114757937	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3435376	chr5:114756460-114757909	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv5292	chr5:114756475-114757993	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3469751	chr5:114756483-114757897	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3523135	chr5:114756492-114757914	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv330072	chr5:114756499-114757889	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3469757	chr5:114756499-114757907	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3471623	chr5:114756499-114757907	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3523141	chr5:114756499-114757907	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv327607	chr5:114756516-114757906	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv1808281	chr5:114756637-114759167	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv1808592	chr5:114756637-114759167	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv1820791	chr5:114756637-114759167	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv1822690	chr5:114756637-114759167	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv1842990	chr5:114756637-114759167	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv1850498	chr5:114756637-114759167	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv442960	chr5:114756637-114759167	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114750000-114758000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr5:114751200-114759400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:114751200-114760200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:114751600-114758000	Weak transcription	Right Ventricle	heart
5	chr5:114751800-114759400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:114752000-114759400	Weak transcription	Lung	lung
7	chr5:114752600-114758200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:114753400-114758600	Weak transcription	Brain Anterior Caudate	brain
9	chr5:114754000-114761600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:114754800-114766800	Weak transcription	Fetal Intestine Large	intestine
11	chr5:114755000-114758000	Weak transcription	Colonic Mucosa	Colon
12	chr5:114755000-114758400	Weak transcription	Pancreas	Pancrea
13	chr5:114755200-114758400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:114755200-114762200	Weak transcription	Fetal Intestine Small	intestine
15	chr5:114755800-114758000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:114755800-114758000	Weak transcription	Left Ventricle	heart
17	chr5:114756000-114758000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr5:114756000-114758000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr5:114756200-114758000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:114756200-114758000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:114756200-114758000	Weak transcription	Adipose Nuclei	Adipose
22	chr5:114756200-114758000	Weak transcription	Fetal Heart	heart
23	chr5:114756200-114758000	Weak transcription	Fetal Muscle Leg	muscle
24	chr5:114756200-114758000	Weak transcription	Psoas Muscle	Psoas
25	chr5:114756200-114758000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr5:114756200-114758000	Weak transcription	Right Atrium	heart
27	chr5:114756200-114758000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr5:114756200-114758200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr5:114756200-114758400	Weak transcription	HSMM	muscle
30	chr5:114756200-114758400	Weak transcription	HSMMtube	muscle
31	chr5:114756200-114758600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr5:114756200-114758600	Weak transcription	A549	lung
33	chr5:114756200-114758600	Weak transcription	NHLF	lung
34	chr5:114756200-114759200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr5:114756400-114757800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr5:114756400-114758000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:114756400-114758000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr5:114756400-114758000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr5:114756400-114758000	Weak transcription	Stomach Mucosa	stomach
40	chr5:114756400-114758000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr5:114756400-114758000	Weak transcription	HMEC	breast
42	chr5:114756400-114758000	Weak transcription	HUVEC	blood vessel
43	chr5:114756400-114758000	Weak transcription	NHDF-Ad	bronchial
44	chr5:114756400-114758400	Weak transcription	Hela-S3	cervix
45	chr5:114756400-114758400	Weak transcription	NHEK	skin
46	chr5:114756400-114758600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr5:114756400-114758600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr5:114756400-114758600	Weak transcription	Osteobl	bone
49	chr5:114756400-114761600	Weak transcription	NH-A	brain
50	chr5:114756400-114762200	Weak transcription	Small Intestine	intestine

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