Variant report

Variant	rs535042708
Chromosome Location	chr10:118894250-118894251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118889635..118891838-chr10:118894016..118895689,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv825577	chr10:118887637-118905958	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3386796	chr10:118893062-118895160	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118890400-118899000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:118890600-118894600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr10:118890600-118894800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
4	chr10:118890800-118894600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr10:118890800-118894600	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr10:118890800-118894600	Bivalent Enhancer	Fetal Stomach	stomach
7	chr10:118891000-118894400	Bivalent/Poised TSS	NHEK	skin
8	chr10:118891800-118894600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
9	chr10:118892200-118894600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr10:118892600-118894400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr10:118893000-118894400	Bivalent Enhancer	Lung	lung
12	chr10:118893000-118894600	Bivalent Enhancer	Fetal Brain Male	brain
13	chr10:118893200-118894400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr10:118893200-118894400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:118893200-118894400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
16	chr10:118893200-118894600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:118893200-118894600	Bivalent/Poised TSS	Brain Substantia Nigra	brain
18	chr10:118893400-118894400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:118893400-118894400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
20	chr10:118893400-118894400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr10:118893400-118894400	Bivalent/Poised TSS	Psoas Muscle	Psoas
22	chr10:118893400-118894600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
23	chr10:118893400-118894800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
24	chr10:118893400-118894800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
25	chr10:118893600-118894400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
26	chr10:118893600-118894400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:118893600-118894400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:118893600-118894400	Active TSS	Brain Anterior Caudate	brain
29	chr10:118893600-118894400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
30	chr10:118893600-118894600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:118893600-118894600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:118893600-118894600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:118893600-118894600	Bivalent Enhancer	Spleen	Spleen
34	chr10:118893800-118894400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:118893800-118894400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
36	chr10:118893800-118894600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:118893800-118894600	Bivalent Enhancer	Liver	Liver
38	chr10:118893800-118894600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
39	chr10:118894000-118894400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
40	chr10:118894000-118894400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:118894000-118894400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:118894000-118894400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:118894000-118894400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
44	chr10:118894000-118894400	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
45	chr10:118894000-118894400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
46	chr10:118894000-118894400	Flanking Bivalent TSS/Enh	Right Ventricle	heart
47	chr10:118894000-118894600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:118894000-118894600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:118894000-118894600	Bivalent Enhancer	Left Ventricle	heart
50	chr10:118894000-118894600	Bivalent Enhancer	HUVEC	blood vessel

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