Variant report

Variant	rs535049778
Chromosome Location	chr2:173929087-173929088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2606171	chr2:173928830-173930264	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173915200-173929200	Weak transcription	Fetal Lung	lung
2	chr2:173920600-173937200	Weak transcription	Psoas Muscle	Psoas
3	chr2:173925200-173930400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:173926200-173930000	Weak transcription	Ovary	ovary
5	chr2:173927200-173929200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:173927600-173929600	Enhancers	NHEK	skin
7	chr2:173927800-173929200	Enhancers	HMEC	breast
8	chr2:173927800-173929600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:173928400-173932400	Weak transcription	Fetal Intestine Large	intestine
10	chr2:173928600-173929600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:173928600-173929600	Enhancers	Fetal Brain Male	brain
12	chr2:173928600-173930200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:173928800-173929200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:173928800-173929200	Enhancers	Fetal Intestine Small	intestine
15	chr2:173928800-173929600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr2:173928800-173929600	Enhancers	Liver	Liver
17	chr2:173928800-173930600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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