Variant report

Variant	rs535070561
Chromosome Location	chr18:43545024-43545025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909588	chr18:43474795-43554371	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv2277	chr18:43543715-43588579	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43492400-43546600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:43494000-43546600	Weak transcription	Stomach Mucosa	stomach
3	chr18:43519200-43546600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:43529000-43546400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr18:43534200-43545600	Weak transcription	Fetal Brain Male	brain
6	chr18:43534600-43546600	Weak transcription	Gastric	stomach
7	chr18:43535000-43546400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr18:43535000-43546400	Weak transcription	GM12878-XiMat	blood
9	chr18:43535200-43545200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr18:43535200-43545200	Weak transcription	Brain Hippocampus Middle	brain
11	chr18:43535200-43545200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr18:43535200-43545400	Weak transcription	Brain Angular Gyrus	brain
13	chr18:43535200-43545600	Weak transcription	Brain Germinal Matrix	brain
14	chr18:43535200-43545600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr18:43535200-43545600	Weak transcription	Small Intestine	intestine
16	chr18:43535200-43546000	Weak transcription	Fetal Intestine Small	intestine
17	chr18:43535200-43546200	Weak transcription	HUVEC	blood vessel
18	chr18:43535200-43546400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr18:43535200-43546400	Weak transcription	Colon Smooth Muscle	Colon
20	chr18:43535200-43546400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr18:43535200-43546400	Weak transcription	Fetal Stomach	stomach
22	chr18:43535200-43546400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr18:43535200-43546600	Weak transcription	Spleen	Spleen
24	chr18:43535400-43545600	Weak transcription	Hela-S3	cervix
25	chr18:43535400-43545800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr18:43535400-43546200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr18:43535400-43546400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr18:43535400-43546400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr18:43535400-43546400	Weak transcription	Brain Anterior Caudate	brain
30	chr18:43535400-43546400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr18:43535400-43546400	Weak transcription	Brain Substantia Nigra	brain
32	chr18:43535400-43546400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr18:43535600-43546400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr18:43535600-43546400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr18:43535600-43546400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr18:43535600-43546400	Weak transcription	Fetal Lung	lung
37	chr18:43535800-43545800	Weak transcription	Colonic Mucosa	Colon
38	chr18:43535800-43546600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr18:43536000-43545400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr18:43536000-43545800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr18:43536200-43545200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr18:43536200-43545400	Weak transcription	Liver	Liver
43	chr18:43536200-43546200	Weak transcription	Fetal Brain Female	brain
44	chr18:43536200-43546400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr18:43536200-43546400	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr18:43536400-43545800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr18:43537400-43546400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr18:43538400-43545400	Weak transcription	Fetal Kidney	kidney
49	chr18:43539600-43545800	Weak transcription	Pancreas	Pancrea
50	chr18:43539600-43546600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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