Variant report

Variant	rs535147987
Chromosome Location	chr22:30576346-30576347
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30574627..30577107-chr22:30609828..30612772,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv588884	chr22:30494371-30590026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv834173	chr22:30515092-30658277	Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv527188	chr22:30529741-30581722	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv524628	chr22:30575163-30581722	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30572000-30577400	Weak transcription	Fetal Intestine Small	intestine
2	chr22:30572800-30578000	Weak transcription	Spleen	Spleen
3	chr22:30572800-30579000	Weak transcription	Fetal Brain Male	brain
4	chr22:30573200-30576400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr22:30573600-30576400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr22:30573600-30579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr22:30574400-30583600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr22:30574800-30579400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr22:30575000-30579800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr22:30575000-30583600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr22:30575200-30578400	Weak transcription	Fetal Thymus	thymus
12	chr22:30575200-30580000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr22:30575400-30579000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr22:30575400-30584400	Enhancers	Primary hematopoietic stem cells	blood
15	chr22:30575400-30584800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr22:30575600-30577400	Weak transcription	Thymus	Thymus
17	chr22:30575600-30577600	Weak transcription	A549	lung
18	chr22:30575600-30579800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr22:30575600-30583400	Weak transcription	Primary T cells from cord blood	blood
20	chr22:30575600-30584600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr22:30575800-30577800	Enhancers	Primary B cells from cord blood	blood
22	chr22:30575800-30578400	Weak transcription	Dnd41	blood
23	chr22:30576200-30576400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr22:30576200-30577600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr22:30576200-30588000	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links