Variant report

Variant	rs535169803
Chromosome Location	chr2:20468951-20468952
allele	-/TAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20467246..20470350-chr2:20472212..20474237,3	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524207	chr2:20448561-20503436	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv999153	chr2:20467929-20521954	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20442000-20491000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:20442800-20474800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:20444400-20489000	Weak transcription	Stomach Mucosa	stomach
4	chr2:20445400-20473800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:20446400-20473600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:20447000-20470200	Strong transcription	Dnd41	blood
7	chr2:20452000-20481600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:20454200-20471600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:20454200-20480800	Weak transcription	Aorta	Aorta
10	chr2:20454200-20480800	Weak transcription	Psoas Muscle	Psoas
11	chr2:20454200-20482800	Weak transcription	Pancreas	Pancrea
12	chr2:20454200-20488800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:20454200-20490800	Weak transcription	Right Ventricle	heart
14	chr2:20454200-20491000	Weak transcription	Gastric	stomach
15	chr2:20454200-20491000	Weak transcription	Spleen	Spleen
16	chr2:20454200-20499600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:20454400-20481600	Weak transcription	Brain Angular Gyrus	brain
18	chr2:20455400-20481600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr2:20455400-20482600	Weak transcription	Ovary	ovary
20	chr2:20455800-20481600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr2:20455800-20485000	Weak transcription	Colonic Mucosa	Colon
22	chr2:20456400-20482600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr2:20456400-20488800	Weak transcription	Small Intestine	intestine
24	chr2:20456600-20477800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr2:20458000-20491000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:20459800-20478000	Weak transcription	Fetal Heart	heart
27	chr2:20459800-20480800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr2:20459800-20481600	Weak transcription	Brain Anterior Caudate	brain
29	chr2:20459800-20481600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr2:20460000-20476600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr2:20460000-20480600	Weak transcription	Brain Hippocampus Middle	brain
32	chr2:20460200-20481000	Weak transcription	HMEC	breast
33	chr2:20460200-20528600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:20460800-20471800	Weak transcription	HSMMtube	muscle
35	chr2:20460800-20480600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr2:20460800-20481600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr2:20460800-20485800	Weak transcription	Fetal Brain Male	brain
38	chr2:20461000-20480000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr2:20461000-20481800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr2:20461800-20469600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr2:20461800-20477800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr2:20462200-20480800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr2:20462200-20482400	Weak transcription	Brain Germinal Matrix	brain
44	chr2:20462400-20480800	Weak transcription	Left Ventricle	heart
45	chr2:20462600-20477200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr2:20462600-20480800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr2:20462600-20482200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr2:20463000-20476600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr2:20463000-20480400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr2:20463400-20469200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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