Variant report

Variant	rs535232839
Chromosome Location	chr2:56143172-56143173
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56143080..56147077-chr2:56148041..56151714,4	MCF-7	breast:
2	chr2:56122074..56124706-chr2:56141826..56144202,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115380	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3349882	chr2:56142778-56143224	Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56116400-56144400	Weak transcription	Lung	lung
2	chr2:56129000-56144200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:56129000-56144400	Weak transcription	HSMMtube	muscle
4	chr2:56129200-56150200	Weak transcription	Pancreas	Pancrea
5	chr2:56132000-56149000	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:56135200-56143600	Weak transcription	Adipose Nuclei	Adipose
7	chr2:56135200-56146600	Weak transcription	Brain Anterior Caudate	brain
8	chr2:56136600-56145800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:56137400-56149400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:56138400-56144200	Weak transcription	NH-A	brain
11	chr2:56138800-56146400	Weak transcription	A549	lung
12	chr2:56138800-56149600	Transcr. at gene 5' and 3'	HUVEC	blood vessel
13	chr2:56139000-56143600	Weak transcription	HMEC	breast
14	chr2:56140400-56143600	Weak transcription	Ovary	ovary
15	chr2:56140400-56143600	Weak transcription	Right Atrium	heart
16	chr2:56140800-56143600	Weak transcription	HSMM	muscle
17	chr2:56141600-56143800	Weak transcription	Aorta	Aorta
18	chr2:56141800-56146200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:56142000-56143200	Enhancers	NHDF-Ad	bronchial
20	chr2:56142000-56143600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:56142000-56143800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:56142000-56143800	Weak transcription	Fetal Stomach	stomach
23	chr2:56142200-56149800	Weak transcription	Gastric	stomach
24	chr2:56142400-56143200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:56142400-56143200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr2:56142400-56143600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:56142400-56149400	Weak transcription	Right Ventricle	heart
28	chr2:56142600-56149200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr2:56142800-56143200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:56142800-56143600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr2:56142800-56146000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr2:56143000-56143600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr2:56143000-56144000	Transcr. at gene 5' and 3'	Osteobl	bone
34	chr2:56143000-56144600	Enhancers	NHLF	lung
35	chr2:56143000-56145800	Strong transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links