Variant report

Variant	rs535239870
Chromosome Location	chr7:116571195-116571196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116570648..116573225-chr7:116591473..116596251,5	K562	blood:
2	chr7:116570547..116571325-chr7:116759326..116759935,3	MCF-7	breast:
3	chr7:116571000..116573926-chr7:116760431..116762728,3	MCF-7	breast:
4	chr7:116569154..116573118-chr7:116592518..116595104,9	MCF-7	breast:
5	chr7:116570128..116571717-chr7:116758838..116760182,19	K562	blood:
6	chr7:116569093..116573225-chr7:116592050..116596557,6	K562	blood:
7	7:115847372-115857098..7:116568602-116574330	GM12878	blood:
8	chr7:116570597..116571199-chr7:116588971..116589553,2	K562	blood:
9	chr7:116569475..116571657-chr7:116592884..116594472,2	MCF-7	breast:
10	chr7:116567075..116568820-chr7:116569252..116572115,2	MCF-7	breast:
11	chr7:116570194..116571338-chr7:116767371..116768123,3	MCF-7	breast:
12	chr7:116570010..116572826-chr7:116583507..116585407,2	K562	blood:
13	chr7:116569687..116574376-chr7:116579850..116586721,6	K562	blood:
14	chr7:116557404..116561072-chr7:116567108..116571328,4	K562	blood:
15	chr7:116569534..116572103-chr7:116572304..116574237,2	K562	blood:
16	chr7:116569093..116572141-chr7:116765850..116768047,3	K562	blood:
17	7:116568602-116574330..7:116957165-116964911	H1-hESC	embryonic stem cell:	embryo
18	chr7:116570164..116571206-chr7:116758946..116760107,5	MCF-7	breast:
19	chr7:116570829..116573211-chr7:116585844..116587737,2	MCF-7	breast:
20	chr7:116570123..116571416-chr7:116767082..116768498,17	K562	blood:
21	7:116568602-116574330..7:116754962-116765597	GM12878	blood:
22	7:116568602-116574330..7:116651084-116657331	GM12878	blood:
23	chr7:116569834..116572713-chr7:116615771..116619319,3	MCF-7	breast:
24	7:116568602-116574330..7:116728195-116740907	GM12878	blood:

No data

Variant related genes	Relation type
ENSG00000227199	Chromatin interaction
ENSG00000222150	Chromatin interaction
ENSG00000105989	Chromatin interaction
ENSG00000004866	Chromatin interaction
ENSG00000226367	Chromatin interaction
ENSG00000135269	Chromatin interaction
ENSG00000214188	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv889074	chr7:116552859-116604194	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv889075	chr7:116552859-116610237	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv889073	chr7:116552859-116611113	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv366350	chr7:116569927-116573535	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116559200-116576000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:116568600-116571400	Enhancers	Fetal Brain Male	brain
3	chr7:116570200-116571200	Flanking Active TSS	HepG2	liver
4	chr7:116570400-116571200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:116570600-116571200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr7:116570600-116571200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr7:116570600-116571400	Enhancers	Fetal Heart	heart
8	chr7:116570800-116571200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
9	chr7:116570800-116571200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr7:116570800-116571200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr7:116570800-116571200	Enhancers	HMEC	breast
12	chr7:116570800-116571200	Enhancers	K562	blood
13	chr7:116570800-116571400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr7:116570800-116571400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
15	chr7:116570800-116572200	Weak transcription	Lung	lung
16	chr7:116570800-116592800	Weak transcription	Right Atrium	heart
17	chr7:116571000-116571200	Enhancers	Brain Cingulate Gyrus	brain
18	chr7:116571000-116571200	Enhancers	A549	lung
19	chr7:116571000-116571200	Enhancers	Hela-S3	cervix
20	chr7:116571000-116572000	Weak transcription	Placenta	Placenta
21	chr7:116571000-116589000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links