Variant report

Variant	rs535243591
Chromosome Location	chr2:58655596-58655597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VRK2-5	chr2:58655473-58655599	ENSG00000233723
2	lnc-VRK2-5	chr2:58655473-58655599	ENSG00000233723
3	lnc-VRK2-5	chr2:58655519-58655599	ENSG00000233723
4	lnc-VRK2-5	chr2:58655519-58655599	ENSG00000233723
5	lnc-VRK2-5	chr2:58655520-58655599	ENSG00000233723
6	lnc-VRK2-5	chr2:58655520-58655599	ENSG00000233723.3
7	lnc-VRK2-5	chr2:58655455-58655599	NONHSAT070858

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755713	chr2:58653580-58782707	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3395723	chr2:58654473-58657321	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv3323812	chr2:58654573-58657096	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv3437316	chr2:58654648-58656446	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58654200-58656000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:58654400-58656200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:58654400-58656200	Active TSS	Fetal Stomach	stomach
4	chr2:58654400-58656400	Active TSS	H1 Cell Line	embryonic stem cell
5	chr2:58654400-58656400	Active TSS	Fetal Brain Female	brain
6	chr2:58654400-58656600	Active TSS	NH-A	brain
7	chr2:58654400-58657000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:58654600-58655600	Active TSS	Hela-S3	cervix
9	chr2:58654600-58656000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:58654600-58656200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:58654600-58656200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:58654600-58656200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:58654600-58656200	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr2:58654600-58656200	Active TSS	Duodenum Mucosa	Duodenum
15	chr2:58654600-58656400	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr2:58654600-58656400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:58654600-58656400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:58654600-58656400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:58654600-58656400	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr2:58654600-58656400	Active TSS	Ovary	ovary
21	chr2:58654600-58656600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:58654600-58656600	Active TSS	H9 Cell Line	embryonic stem cell
23	chr2:58654600-58656800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr2:58654800-58655600	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:58654800-58655600	Flanking Bivalent TSS/Enh	Liver	Liver
26	chr2:58654800-58655600	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr2:58654800-58655600	Bivalent/Poised TSS	GM12878-XiMat	blood
28	chr2:58654800-58655800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr2:58654800-58656000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:58654800-58656000	Active TSS	Thymus	Thymus
31	chr2:58654800-58656200	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr2:58654800-58656200	Active TSS	HUES6 Cell Line	embryonic stem cell
33	chr2:58654800-58656200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:58654800-58656200	Bivalent/Poised TSS	Esophagus	oesophagus
35	chr2:58654800-58656200	Active TSS	Fetal Intestine Small	intestine
36	chr2:58654800-58656200	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr2:58654800-58656200	Active TSS	Pancreas	Pancrea
38	chr2:58654800-58656200	Active TSS	Rectal Smooth Muscle	rectum
39	chr2:58654800-58656200	Active TSS	HSMM	muscle
40	chr2:58654800-58656200	Bivalent/Poised TSS	HSMMtube	muscle
41	chr2:58654800-58656200	Active TSS	NHDF-Ad	bronchial
42	chr2:58654800-58656400	Active TSS	HUES64 Cell Line	embryonic stem cell
43	chr2:58654800-58656400	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr2:58654800-58656400	Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr2:58654800-58656400	Active TSS	Brain Substantia Nigra	brain
46	chr2:58654800-58656400	Active TSS	Fetal Kidney	kidney
47	chr2:58654800-58656600	Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr2:58654800-58656600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr2:58654800-58656600	Active TSS	Brain Angular Gyrus	brain
50	chr2:58654800-58656600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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