Variant report

Variant	rs535254618
Chromosome Location	chr1:178978571-178978572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:178944582..178946148-chr1:178977340..178979414,2	K562	blood:
2	chr1:178975112..178978831-chr1:178980259..178984628,4	MCF-7	breast:
3	chr1:178977019..178978702-chr1:178984062..178987860,3	K562	blood:
4	chr1:178978287..178981942-chr1:178982197..178988679,6	K562	blood:
5	chr1:178971758..178974744-chr1:178976786..178978756,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3320853	chr1:178977290-178979832	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3320854	chr1:178977334-178979772	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3320855	chr1:178977334-178979772	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv12219	chr1:178977936-178979438	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv548266	chr1:178977963-178978956	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv548267	chr1:178977963-178979112	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv548268	chr1:178977963-178979300	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv548269	chr1:178978019-178979300	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv548270	chr1:178978074-178979233	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv548271	chr1:178978129-178978956	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv548272	chr1:178978235-178979058	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv548273	chr1:178978235-178979300	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv548274	chr1:178978409-178979300	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv548275	chr1:178978409-178985658	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv548276	chr1:178978562-178979300	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178972400-178986000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:178972600-178981200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:178973200-178979600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:178973400-178980200	Weak transcription	Fetal Intestine Small	intestine
5	chr1:178973400-178980200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr1:178973600-178983200	Weak transcription	K562	blood
7	chr1:178976600-178978600	Enhancers	Osteobl	bone
8	chr1:178977000-178985400	Weak transcription	A549	lung
9	chr1:178977000-178985600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:178977200-178979600	Weak transcription	Stomach Mucosa	stomach
11	chr1:178977200-178981600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:178977800-178978600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:178978000-178978600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:178978000-178978600	Enhancers	Adipose Nuclei	Adipose
15	chr1:178978000-178978600	Enhancers	Psoas Muscle	Psoas
16	chr1:178978000-178978800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:178978200-178978600	Enhancers	Aorta	Aorta
18	chr1:178978200-178978600	Enhancers	Right Atrium	heart
19	chr1:178978200-178978600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr1:178978200-178984600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:178978200-178986000	Weak transcription	HepG2	liver
22	chr1:178978400-178979400	Enhancers	Stomach Smooth Muscle	stomach
23	chr1:178978400-178981400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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