Variant report

Variant	rs535289660
Chromosome Location	chr5:70590274-70590275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB33	chr5:70590232-70590552	HepG2	liver:	n/a	n/a
2	FOXA1	chr5:70590174-70590726	HepG2	liver:	n/a	chr5:70590493-70590505
3	POLR2A	chr5:70590231-70590472	Hela-S3	cervix:	n/a	n/a
4	NR3C1	chr5:70590233-70590570	A549	lung:	n/a	n/a
5	FOSL2	chr5:70590174-70590588	HepG2	liver:	n/a	chr5:70590469-70590477 chr5:70590423-70590433 chr5:70590467-70590479 chr5:70590469-70590478 chr5:70590470-70590477 chr5:70590423-70590433
6	FOSL2	chr5:70590069-70590682	HepG2	liver:	n/a	chr5:70590469-70590477 chr5:70590423-70590433 chr5:70590467-70590479 chr5:70590469-70590478 chr5:70590470-70590477 chr5:70590423-70590433
7	NR3C1	chr5:70590210-70590608	A549	lung:	n/a	n/a
8	TAF1	chr5:70590217-70590547	Hela-S3	cervix:	n/a	n/a
9	JUND	chr5:70590238-70590586	HepG2	liver:	n/a	chr5:70590469-70590477 chr5:70590423-70590433 chr5:70590467-70590479 chr5:70590469-70590478 chr5:70590470-70590477 chr5:70590423-70590433
10	GATA2	chr5:70589588-70591008	K562	blood:	n/a	n/a
11	GABPA	chr5:70590254-70590645	Hela-S3	cervix:	n/a	n/a
12	PAX5	chr5:70590247-70590545	GM12878	blood:	n/a	n/a
13	PAX5	chr5:70589969-70590548	GM12878	blood:	n/a	chr5:70590011-70590021
14	NR3C1	chr5:70590161-70590680	A549	lung:	n/a	n/a
15	FOXA2	chr5:70590258-70590604	A549	lung:	n/a	chr5:70590493-70590505
16	SP1	chr5:70590269-70590625	GM12878	blood:	n/a	n/a
17	TAF1	chr5:70590220-70590463	Hela-S3	cervix:	n/a	n/a
18	POU2F2	chr5:70590219-70590633	GM12878	blood:	n/a	chr5:70590587-70590608
19	BCL11A	chr5:70590267-70590547	GM12878	blood:	n/a	chr5:70590468-70590477 chr5:70590469-70590478
20	POLR2A	chr5:70590182-70590591	PANC-1	pancreas:	n/a	n/a
21	POLR2A	chr5:70590208-70590574	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr5:70590251-70590612	PANC-1	pancreas:	n/a	n/a
23	USF1	chr5:70589854-70590754	A549	lung:	n/a	n/a
24	ZBTB33	chr5:70590036-70590522	K562	blood:	n/a	n/a

Variant related genes	Relation type
GUSBP9	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805631	chr5:69705362-70657888	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv529287	chr5:69732192-70716662	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv881986	chr5:69830067-70649421	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv882000	chr5:69924203-70606506	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv882004	chr5:69945222-70606506	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv882034	chr5:70096904-70606506	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv1033366	chr5:70254883-70710447	Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv882135	chr5:70275720-70689452	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv433373	chr5:70291250-70649421	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
10	nsv882149	chr5:70337808-70627412	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv533712	chr5:70369930-70657718	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv882156	chr5:70379466-70664663	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv533636	chr5:70386570-70663068	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv1034703	chr5:70391173-70995695	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
15	esv1813375	chr5:70391749-70663300	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
16	esv1846606	chr5:70391749-70663300	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
17	esv1812997	chr5:70391881-70657688	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
18	esv1802971	chr5:70443659-70660252	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
19	esv1792558	chr5:70461915-70659556	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
20	esv1804508	chr5:70488704-70660252	Enhancers Genic enhancers Strong transcription Weak transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
21	esv1805483	chr5:70489943-70660252	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv882163	chr5:70516801-70599000	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv882164	chr5:70516801-70606506	Enhancers Genic enhancers Weak transcription Strong transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv882165	chr5:70516801-70620213	Enhancers Weak transcription Genic enhancers Strong transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv882166	chr5:70516801-70649421	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
26	nsv882167	chr5:70516801-70664663	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
27	nsv980680	chr5:70530575-70702151	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
28	esv11712	chr5:70532208-70662030	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
29	esv3360443	chr5:70532896-70661394	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
30	esv3493356	chr5:70533146-70650344	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
31	esv3493357	chr5:70533146-70650344	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
32	esv3333982	chr5:70533146-70656744	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
33	nsv598640	chr5:70534140-70606506	Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
34	esv1813006	chr5:70535624-70660252	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
35	nsv882168	chr5:70541571-70649421	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
36	nsv882169	chr5:70541571-70679626	Weak transcription Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
37	nsv882170	chr5:70556976-70664663	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
38	nsv882171	chr5:70556976-70667205	Enhancers Weak transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
39	esv1806868	chr5:70563283-70660252	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
40	esv3411250	chr5:70564596-70608794	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
41	esv1806453	chr5:70566632-70660982	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
42	nsv882172	chr5:70567610-70667205	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
43	nsv882173	chr5:70567610-70689452	Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
44	esv3379458	chr5:70572496-70608494	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
45	esv1794586	chr5:70575613-70643100	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
46	esv1801998	chr5:70575613-70656393	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
47	nsv882174	chr5:70576973-70679626	Weak transcription Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
48	nsv882175	chr5:70576973-70689452	Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
49	esv1813661	chr5:70588850-70659556	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
50	esv3385874	chr5:70588896-70597594	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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