Variant report

Variant	rs535298400
Chromosome Location	chr6:73361996-73361997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73358114..73359943-chr6:73361641..73364070,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3472802	chr6:73361866-73365223	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3472803	chr6:73361891-73365203	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3472804	chr6:73361891-73365203	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv823730	chr6:73361941-73365099	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73336200-73362800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73355200-73362200	Weak transcription	Psoas Muscle	Psoas
3	chr6:73358600-73362600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:73358800-73362200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:73358800-73362600	Enhancers	HSMM	muscle
6	chr6:73358800-73362600	Enhancers	HSMMtube	muscle
7	chr6:73359000-73362200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:73359600-73362000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:73359600-73362800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:73359600-73373000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:73359600-73398800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:73359800-73386800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:73360400-73362200	Enhancers	NH-A	brain
14	chr6:73360400-73372600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:73360600-73362200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:73360600-73362200	Weak transcription	Fetal Heart	heart
17	chr6:73360600-73362400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr6:73360600-73362400	Enhancers	Osteobl	bone
19	chr6:73360800-73362000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:73360800-73362000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:73360800-73362000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:73360800-73362000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:73360800-73362200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:73361000-73362000	Weak transcription	Aorta	Aorta
25	chr6:73361000-73367200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:73361200-73362200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:73361800-73362600	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:73361800-73362600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:73361800-73362600	Enhancers	GM12878-XiMat	blood
30	chr6:73361800-73362800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:73361800-73367200	Weak transcription	NHEK	skin

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