Variant report

Variant	rs535307946
Chromosome Location	chr2:113460362-113460363
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428724	chr2:113376894-113555421	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1010106	chr2:113394981-113556071	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv526301	chr2:113451498-113495785	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	esv3458160	chr2:113460280-113484749	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	esv3458161	chr2:113460322-113484724	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113451800-113462800	Weak transcription	Dnd41	blood
2	chr2:113454800-113460600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr2:113458600-113463400	Weak transcription	Osteobl	bone
4	chr2:113458600-113464000	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:113458800-113460600	Weak transcription	Fetal Brain Female	brain
6	chr2:113458800-113463400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:113458800-113469000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr2:113459400-113463400	Weak transcription	Primary B cells from cord blood	blood
9	chr2:113459600-113463000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:113459600-113463200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:113459800-113463600	Weak transcription	NHLF	lung
12	chr2:113460000-113460800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr2:113460000-113462000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr2:113460000-113462400	Weak transcription	K562	blood
15	chr2:113460000-113463000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr2:113460200-113462000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:113460200-113462600	Weak transcription	GM12878-XiMat	blood
18	chr2:113460200-113462800	Weak transcription	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links