Variant report

Variant	rs535309031
Chromosome Location	chr1:94273227-94273228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94269224..94270816-chr1:94271541..94273859,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546822	chr1:94246577-94289863	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1815663	chr1:94246577-94291252	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1877	chr1:94247756-94292908	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv508415	chr1:94256122-94305339	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1802380	chr1:94272119-94291252	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94267600-94273400	Weak transcription	Lung	lung
2	chr1:94271000-94279200	Weak transcription	Adipose Nuclei	Adipose
3	chr1:94271200-94273400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:94271200-94273400	Enhancers	Hela-S3	cervix
5	chr1:94271200-94275400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:94271200-94275800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:94271200-94276000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:94271200-94276000	Weak transcription	Placenta	Placenta
9	chr1:94271200-94276000	Weak transcription	Right Atrium	heart
10	chr1:94271200-94276000	Weak transcription	Right Ventricle	heart
11	chr1:94271200-94276600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:94271200-94276600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:94271200-94278200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:94271800-94273400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr1:94272000-94276000	Weak transcription	HSMM	muscle
16	chr1:94272000-94276000	Weak transcription	NHLF	lung
17	chr1:94272400-94274800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:94273000-94273600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:94273000-94274600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:94273200-94273600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:94273200-94274400	ZNF genes & repeats	HMEC	breast

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