Variant report

Variant	rs535327431
Chromosome Location	chr11:108099377-108099378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108092760..108095657-chr11:108096566..108100675,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149311	Chromatin interaction
ENSG00000149308	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv556430	chr11:108097333-108175462	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv556431	chr11:108098142-108115587	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv556432	chr11:108098563-108115539	Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094600-108121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108094800-108100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:108094800-108100400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:108094800-108116000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:108094800-108147400	Weak transcription	Esophagus	oesophagus
6	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:108095000-108100400	Weak transcription	Ovary	ovary
8	chr11:108095000-108121400	Weak transcription	Colonic Mucosa	Colon
9	chr11:108095200-108100400	Weak transcription	Gastric	stomach
10	chr11:108095200-108106800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:108095400-108099400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:108095400-108099800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:108095400-108100400	Weak transcription	Fetal Stomach	stomach
14	chr11:108095400-108103800	Weak transcription	Right Ventricle	heart
15	chr11:108095400-108119800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:108095600-108100600	Weak transcription	Aorta	Aorta
17	chr11:108095800-108099400	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:108095800-108100200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:108095800-108102400	Weak transcription	Fetal Kidney	kidney
20	chr11:108095800-108119800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:108095800-108122400	Weak transcription	Brain Angular Gyrus	brain
22	chr11:108096000-108100400	Weak transcription	NHEK	skin
23	chr11:108096000-108102600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:108096000-108107800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr11:108096000-108148600	Weak transcription	Fetal Heart	heart
26	chr11:108096200-108099400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:108096200-108100400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:108096200-108106600	Weak transcription	A549	lung
29	chr11:108096400-108100000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:108096400-108100200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:108096400-108100400	Weak transcription	Brain Germinal Matrix	brain
32	chr11:108096400-108107800	Weak transcription	Psoas Muscle	Psoas
33	chr11:108096400-108156400	Weak transcription	NHLF	lung
34	chr11:108096600-108099400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr11:108096600-108099400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:108096600-108099400	Weak transcription	Small Intestine	intestine
37	chr11:108096600-108100000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:108096600-108100200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:108096600-108100200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:108096600-108100200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:108096600-108100400	Weak transcription	Fetal Intestine Small	intestine
42	chr11:108096600-108100400	Weak transcription	Lung	lung
43	chr11:108096600-108100600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:108096600-108100600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr11:108096600-108107000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:108096600-108107800	Weak transcription	Fetal Brain Male	brain
47	chr11:108096600-108108600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:108096600-108121400	Weak transcription	Spleen	Spleen
49	chr11:108096600-108128400	Weak transcription	Pancreas	Pancrea
50	chr11:108096800-108100800	Genic enhancers	Primary B cells from peripheral blood	blood

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