Variant report

Variant	rs535354095
Chromosome Location	chr12:60142816-60142817
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899132	chr12:60087572-60211476	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv899133	chr12:60135504-60202218	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv899134	chr12:60141518-60263723	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60099600-60143200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:60100000-60175200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr12:60113000-60143600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:60124000-60168800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr12:60127800-60143000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:60127800-60143200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr12:60128200-60143000	Weak transcription	Gastric	stomach
8	chr12:60130800-60172200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr12:60131000-60186000	Weak transcription	Pancreas	Pancrea
10	chr12:60132400-60165600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr12:60137400-60161000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:60138000-60147000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:60138600-60168400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:60138800-60143200	Weak transcription	Left Ventricle	heart
15	chr12:60138800-60173200	Weak transcription	Aorta	Aorta
16	chr12:60139000-60144600	Weak transcription	Adipose Nuclei	Adipose
17	chr12:60141600-60143000	Weak transcription	Dnd41	blood
18	chr12:60141800-60161000	Weak transcription	Primary B cells from cord blood	blood
19	chr12:60142800-60143400	ZNF genes & repeats	Primary T cells from cord blood	blood
20	chr12:60142800-60143600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr12:60142800-60143800	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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