Variant report

Variant	rs535355769
Chromosome Location	chr3:143514654-143514655
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143514332..143514918-chr3:143670242..143670855,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1001076	chr3:143513526-143547076	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536747	chr3:143513526-143547076	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143494800-143515600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr3:143494800-143515800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr3:143505800-143514800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:143505800-143514800	Weak transcription	Lung	lung
5	chr3:143505800-143515400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:143505800-143525800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:143506000-143514800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:143506000-143521200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:143506400-143514800	Weak transcription	Brain Substantia Nigra	brain
10	chr3:143506400-143515800	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:143509800-143514800	Weak transcription	Esophagus	oesophagus
12	chr3:143510600-143515000	Weak transcription	Small Intestine	intestine
13	chr3:143512000-143529200	Weak transcription	Primary B cells from cord blood	blood
14	chr3:143512600-143515200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr3:143512800-143514800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:143512800-143515800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr3:143513400-143514800	Weak transcription	Fetal Lung	lung
18	chr3:143513400-143517400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:143513600-143516800	Weak transcription	HSMM	muscle
20	chr3:143513600-143533600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr3:143513800-143514800	Weak transcription	Colon Smooth Muscle	Colon
22	chr3:143513800-143515000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr3:143513800-143516000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr3:143513800-143517800	Weak transcription	Fetal Stomach	stomach
25	chr3:143513800-143525800	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:143514000-143515000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:143514000-143515200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr3:143514000-143524200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr3:143514000-143527400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr3:143514200-143515000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:143514200-143519800	Weak transcription	HSMMtube	muscle
32	chr3:143514200-143544200	Weak transcription	Primary T cells from cord blood	blood
33	chr3:143514400-143515000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr3:143514400-143515000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:143514400-143515000	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr3:143514400-143515200	Enhancers	H1 Cell Line	embryonic stem cell
37	chr3:143514600-143515000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr3:143514600-143515000	Enhancers	Brain Anterior Caudate	brain
39	chr3:143514600-143517000	Weak transcription	H9 Cell Line	embryonic stem cell

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